View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_41 (Length: 250)
Name: NF11519_high_41
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 10873769 - 10873545
Alignment:
| Q |
19 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggaga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10873769 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagccgtggaga |
10873670 |
T |
|
| Q |
119 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10873669 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagat |
10873570 |
T |
|
| Q |
219 |
tccggtgggtgttgccggtcctttg |
243 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
10873569 |
tccggtgggtgttgccggtcctttg |
10873545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 10878840 - 10878616
Alignment:
| Q |
19 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10878840 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagccgtggaga |
10878741 |
T |
|
| Q |
119 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10878740 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagat |
10878641 |
T |
|
| Q |
219 |
tccggtgggtgttgccggtcctttg |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
10878640 |
tccggtgggtgttgccggtcctttg |
10878616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 10883911 - 10883687
Alignment:
| Q |
19 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
10883911 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagccgtggaga |
10883812 |
T |
|
| Q |
119 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10883811 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagat |
10883712 |
T |
|
| Q |
219 |
tccggtgggtgttgccggtcctttg |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
10883711 |
tccggtgggtgttgccggtcctttg |
10883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 10866536 - 10866760
Alignment:
| Q |
19 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10866536 |
gtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggaga |
10866635 |
T |
|
| Q |
119 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
10866636 |
gagttaccggaaggtcacttgaaggtttaccgatggaaggttttgactacaattctatattaggacagtgttgcgagatgccgatagggtttgttcagat |
10866735 |
T |
|
| Q |
219 |
tccggtgggtgttgccggtcctttg |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10866736 |
tccggtgggtgttgccggtcctttg |
10866760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 39676104 - 39676324
Alignment:
| Q |
23 |
gtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggagagagt |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
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|
| T |
39676104 |
gtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgattaggaaccaagctgtggagagagt |
39676203 |
T |
|
| Q |
123 |
taccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagattccg |
222 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
39676204 |
tactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaatagggtttgttcagattccg |
39676303 |
T |
|
| Q |
223 |
gtgggtgttgccggtcctttg |
243 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
39676304 |
gtgggtgttgccggtcctttg |
39676324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 10887825 - 10887605
Alignment:
| Q |
23 |
gtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggagagagt |
122 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || |
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|
| T |
10887825 |
gtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagattgccgtcgtgcagcaaagattaggaaccaagcagtggagagggt |
10887726 |
T |
|
| Q |
123 |
taccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagattccg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
10887725 |
taccggaaggtcacttgaaggtttaccgatgaaaggttttgactacgattctatattaggacagtgttgcgagatgccgatagggtttgttcaaattccg |
10887626 |
T |
|
| Q |
223 |
gtgggtgttgccggtcctttg |
243 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10887625 |
gtgggtgttgccggtcctttg |
10887605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 10046178 - 10046380
Alignment:
| Q |
41 |
caattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggagagagttaccggaaggtcacttga |
140 |
Q |
| |
|
||||||| || |||||||||||||| || || ||||||||| |||||| || || | |||||||||||||||||||||||||||| |||||| |
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|
| T |
10046178 |
caattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctc |
10046277 |
T |
|
| Q |
141 |
aggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtcct |
240 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||| |
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|
| T |
10046278 |
gggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgccggacct |
10046377 |
T |
|
| Q |
241 |
ttg |
243 |
Q |
| |
|
||| |
|
|
| T |
10046378 |
ttg |
10046380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 30709688 - 30709588
Alignment:
| Q |
139 |
gaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtc |
238 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||| |
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|
| T |
30709688 |
gaaggtttaccgttggaaggttttgattacgattcgatattgggacagtgttgtgagatgccgatagggtttgttcaaattccggttggtgttgcgggtc |
30709589 |
T |
|
| Q |
239 |
c |
239 |
Q |
| |
|
| |
|
|
| T |
30709588 |
c |
30709588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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