View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_42 (Length: 249)
Name: NF11519_high_42
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 29259320 - 29259529
Alignment:
| Q |
14 |
agaagcataggcaaaagaaaatgtgggaacatcaaatagtagaagttggaaggtcagtactacagtagtacgagcatagcctaatatgtgtaaagtggtc |
113 |
Q |
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| T |
29259320 |
agaagcatgggcaaaagaaaatgtgggaacatcaaattgtagaagttggaaggtcattactacagta---cgagtatagcctaatatgtgtaaagtggtc |
29259416 |
T |
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| Q |
114 |
ccttccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29259417 |
ccttccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaaga |
29259516 |
T |
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| Q |
214 |
aacgcatgcatat |
226 |
Q |
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||||||||||||| |
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| T |
29259517 |
aacgcatgcatat |
29259529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 29261264 - 29261230
Alignment:
| Q |
194 |
caaaaggaagaagaacaagaaacgcatgcatatat |
228 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
29261264 |
caaaagaaagaagaacaagaaacgcatgcatatat |
29261230 |
T |
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