View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_high_46 (Length: 239)
Name: NF11519_high_46
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 6029840 - 6029681
Alignment:
| Q |
65 |
aactaaataaatcttctcctccaatgctatcatctctttgatattcttagcggcaagcttctcctgctctcatcgatccattctgccacgaaacctcaac |
164 |
Q |
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| T |
6029840 |
aactaaataaatcttctcctccaatgctatcatctctttgatattcttagcggcaagcttctcctgctcacatcgatccattctgccacaaaacctcaac |
6029741 |
T |
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| Q |
165 |
cgaagagaagttgagcctggtcagagtcatgggtaaaggatgtttatgtcctccaagctg |
224 |
Q |
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| T |
6029740 |
cgaagagaagttgagcctggtcagagtcatgggtaaaggatgtttatgtcctccaagctg |
6029681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 6034625 - 6034503
Alignment:
| Q |
95 |
catctctttgatattcttagcggcaagcttctcctgctctcatcgatccattctgccacgaaa-cctcaaccgaagagaagttgagcctggtcagagtca |
193 |
Q |
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||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| || |||||| ||||| || | |
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| T |
6034625 |
catctctttgaaattcttagcggcaagcttctcctgctcacaacgatccattctgccacgaaaccctcgaccaaagagacgtcgagcctcgtcagggtta |
6034526 |
T |
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| Q |
194 |
tgggtaaaggatgtttatgtcctc |
217 |
Q |
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| T |
6034525 |
t-ggtaaaggatgtttaggtcctc |
6034503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 6029904 - 6029863
Alignment:
| Q |
8 |
actaggagatggagaatatgcatatagtcttatttcagtatt |
49 |
Q |
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| T |
6029904 |
actaggagatggagaacatgcatatagtcttatttcagtatt |
6029863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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