View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_high_52 (Length: 220)
Name: NF11519_high_52
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 7639465 - 7639680
Alignment:
| Q |
1 |
atactattcatcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaagtagtaatggacattctcctaaagac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639465 |
atactattcagcttcttccttcatttcaaaatttgacacttctgtttctgagggctaacactttcactagtgaagtagtaatggacattctcctaaagac |
7639564 |
T |
|
| Q |
101 |
tcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccatgttttgaggttaagaaatac--taa |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
7639565 |
tcctaatctgaaagctcttcattttcacgtggtaaatcttacatcatgcttcactactattgcattgcgtaccatgttttgaggttaagaaatactataa |
7639664 |
T |
|
| Q |
199 |
tattactgatgtccat |
214 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
7639665 |
tattacttatgtccat |
7639680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 7632777 - 7632919
Alignment:
| Q |
9 |
catcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaagtagtaatggacattctcctaaagactcctaatc |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||| |
|
|
| T |
7632777 |
catcatcttccttcatttcaaaatttgacacatctgcttctgaggactaacactttcactagtgaagtagtaacgggcattcttctaaagactcctaatc |
7632876 |
T |
|
| Q |
109 |
tgaaagctcttcattttcatacggtacatcttacatcatgctt |
151 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
7632877 |
tgaaagctcttcatattcatacggtacatcttcaatcatgctt |
7632919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 31268050 - 31267996
Alignment:
| Q |
65 |
cactagtgaagtagtaatggacattctcctaaagactcctaatctgaaagctctt |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| |
|
|
| T |
31268050 |
cactagtgaagtactaatggacattctccgaaagactcctaaactggaagttctt |
31267996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University