View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_high_54 (Length: 209)
Name: NF11519_high_54
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_high_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 36463350 - 36463490
Alignment:
| Q |
21 |
gcctcaagattcatatgacaccaattcctccttgccataacaaaacaatcttaatca------tcatctctcgcatatatcacaatgctctatatttatc |
114 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
36463350 |
gccttaagattcatatgacaacaattcttccttgccacaacaaaacaatcttaatcatcatcatcatctctcgcagatatcacaatgctctatatttgtc |
36463449 |
T |
|
| Q |
115 |
ttgctaatttaaaacaatcatctgcctacttgctcatgatt |
155 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36463450 |
ttcctaatttaaaacaatcatctgcctacttgctcatgatt |
36463490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University