View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_low_1 (Length: 893)
Name: NF11519_low_1
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_1 |
 | |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 817; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 817; E-Value: 0
Query Start/End: Original strand, 19 - 876
Target Start/End: Original strand, 26131392 - 26132245
Alignment:
| Q |
19 |
gttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcacaccataacaaacactccaggctcctatcattgtcaaaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26131392 |
gttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcacaccataacaaacactccagcctcctatcattgtcaaaac |
26131491 |
T |
|
| Q |
119 |
agtgtctcacaaacatacgagggtctttggtgcaaagatctcgaagatactcaactgcaccacatgcagcggaaaacatgtcagcctgagtcatttttct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26131492 |
agtgtctcacaaacatacgagggtctttggtgcaaagatctcgaagatacttaactgcaccacatgcatcggaaaacatgtcagcctgagtcatttttct |
26131591 |
T |
|
| Q |
219 |
atacgccggtagcaatccacacaaagcaccaccaagcaaatcatgattgtgatcaatttcaaatccagtaacataccaatgccttgacaaaatatctaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131592 |
atacgccggtagcaatccacacaaagcaccaccaagcaaatcatgattgtgatcaatttcaaatccagtaacataccaatgccttgacaaaatatctaaa |
26131691 |
T |
|
| Q |
319 |
tggactcgaaattttgcgttacacccacatcttgtttcaattttttgctcgtgctttcgggtttccatagttagtcccctatcctccctgtatccttgac |
418 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131692 |
tggactcgaaattttgcattacacccacatcttgtttcaattttttgctcgtgctttcgggtttccatagttagtcccctatcctccctgtatccttgac |
26131791 |
T |
|
| Q |
419 |
atgaacaaacaaaggtttgctgaagaatttcacctttgcgatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaaccaagagta |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26131792 |
atgaacaaacaaaggtttgctgaagaatttcacctttgcgatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaatcaagagta |
26131891 |
T |
|
| Q |
519 |
aaacatgtaggcaacctccaacccaacaaactcatacctttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatctttt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26131892 |
aaacatgtaggcaacctccaacccaacaaactcatacctttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatctttt |
26131991 |
T |
|
| Q |
619 |
ataacaatcagatagacttcagaagcgtgaattccatccgaaaaaacatgcacattttcattagattcatccaataaacgttcatctaagtatgcatttc |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26131992 |
ataacaatcagatagacttcagaagcgtgaattccatccgaaaaaacatgcacattttcattagattcatccagtaaacgttcatctaagtatgcatttc |
26132091 |
T |
|
| Q |
719 |
catcgacatctccattacattgccccccatctaggttgttgctaccaacactttcttctcctaaatcctgtaacaagataatcttttaatgaaagtaaat |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26132092 |
catcgacatctccattacattgccccccatctaggttgttgctaccaacactttcttctcctaaatcctgtaacaagataatcttttaatgaaagtaaat |
26132191 |
T |
|
| Q |
819 |
tatataaaacgacaattaatttccaattttcaaagcaacaggtacttacacttggaat |
876 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26132192 |
tatataaaacgac----aatttccaattttcaaagcaacaggtacttacacttggaat |
26132245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 120; Significance: 6e-61; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 306 - 565
Target Start/End: Original strand, 57951 - 58210
Alignment:
| Q |
306 |
caaaatatctaaatggactcgaaattttgcgttacacccacatcttgtttcaattttttgctcgtgctttcgggtttccatagttagtcccctatcctcc |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||| ||||| |||||||||||||| | |||| |||||||||||| |
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| T |
57951 |
caaaatatctaaatagactcgaaattttgcattacactcacatcttgtttcattttttggctcgcgctttcgggtttccttggttaaccccctatcctcc |
58050 |
T |
|
| Q |
406 |
ctgtatccttgacatgaacaaacaaaggtttgctgaagaatttcacctttgcgatccctaacaacttgccccttacgaactgaaaatccagacattctag |
505 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| | |||||| || ||||||||||| | ||| |||||||||||||||||||| ||| |||||| |
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| T |
58051 |
ttgagtccttgacatgaacaaacaaaagtttgctgaactacttcaccattccgatccctaaccatttggcccttacgaactgaaaatcccgacgttctag |
58150 |
T |
|
| Q |
506 |
caaaccaagagtaaaacatgtaggcaacctccaacccaacaaactcatacctttccacat |
565 |
Q |
| |
|
||||||||||||| || | || || || ||||| |||||||| ||||| || ||||||| |
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| T |
58151 |
caaaccaagagtagaaaagataagccacatccaatccaacaaattcatatctctccacat |
58210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 350 - 639
Target Start/End: Complemental strand, 11009787 - 11009499
Alignment:
| Q |
350 |
ttgtttcaattttttgctcgtgctttcgggtttccatagttagtcccctatcctccctgtatccttgacatgaacaaacaaaggtttgctgaagaatttc |
449 |
Q |
| |
|
|||||||| ||||| |||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || || || | |
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|
| T |
11009787 |
ttgtttcattttttggctcacgctttcggttttccatagttaaccccctatcctccctgtaaccttgacatgaacaaacaaaggtctttggacgactt-c |
11009689 |
T |
|
| Q |
450 |
acctttgcgatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaaccaagagtaaaacatgtaggcaacctccaacccaacaaac |
549 |
Q |
| |
|
||| || |||||||| | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || || |||||||| |
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|
| T |
11009688 |
accatttcgatccctcgccacttgccccttacgaactgaaaatcctgacatgctggcaaaccaagagtaaaacatgtaggcaacatctaaaccaacaaat |
11009589 |
T |
|
| Q |
550 |
tcatacctttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatcttttataacaatcagatagacttca |
639 |
Q |
| |
|
||||| |||||||||||| | | ||||| |||||| | |||||| || | |||||| |||||||||||||| | |||| ||| ||||||| |
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| T |
11009588 |
tcatatctttccacatcagccacacaaatgttttccaggtcaatattcattatatcaaccatatcttttatcataatcggattgacttca |
11009499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 11010178 - 11010016
Alignment:
| Q |
18 |
agttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcacaccataacaaacactccaggctcctatcattgtcaaaa |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || ||| || |||||||||| ||||| | |
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| T |
11010178 |
agttgcatcaaaggccaaaacatctccaaatatctcataattcatacgactttcaccgtcacaccagaacagacgctcaagcctcctatcatcgtcaata |
11010079 |
T |
|
| Q |
118 |
cagtgtctcacaaacatacgagggtctttggtgcaaagatctcgaagatactcaactgcacca |
180 |
Q |
| |
|
||| | |||||||||| |||| || | |||||||||||||||||||||| |||| ||||| |
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|
| T |
11010078 |
cagcttttcacaaacattagaggatcgtctgtgcaaagatctcgaagatacttaacttcacca |
11010016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 265 - 543
Target Start/End: Original strand, 37553649 - 37553926
Alignment:
| Q |
265 |
ttgtgatcaatttcaaatccagtaacataccaatgccttgacaaaatatctaaatggactcgaaattttgcgttacacccacatcttgtttcaatttttt |
364 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||||||| || |||| |
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|
| T |
37553649 |
ttgtgatcaaatttaaatacagtaacataccaatgccttgacaaaatatctaaatggacttgaaattttgcattgcacccacgtcttgtttc-atgtttt |
37553747 |
T |
|
| Q |
365 |
gctcgtgctttcgggtttccatagttagtcccctatcctccctgtatccttgacatgaacaaacaaaggtttgctgaagaatttcacctttgcgatccct |
464 |
Q |
| |
|
||| ||||||| |||| ||||||||||| ||| ||||||||| ||||||||||| ||||| ||||||||||| | | || || | | ||||||||||| |
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|
| T |
37553748 |
gctggtgcttttgggtgtccatagttagccccatatcctcccactatccttgacacgaacatgcaaaggtttgccggataacttgatcattgcgatccct |
37553847 |
T |
|
| Q |
465 |
aacaacttgccccttacgaactgaaaatccagacattctagcaaaccaagagtaaaacatgtaggcaacctccaaccca |
543 |
Q |
| |
|
|| |||| | |||| ||||| ||| ||| ||||| || |||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
37553848 |
caccacttagctcttatgaactacaaacccatacattttaacaaaccaagagtaaaacatgcaggcaacatctaaccca |
37553926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 35242178 - 35242340
Alignment:
| Q |
18 |
agttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcacaccataacaaacactccaggctcctatcattgtcaaaa |
117 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || ||| ||||||||||||| |||| | |
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| T |
35242178 |
agttgcatcgaaggccaaaacatctccaaatatctcataattcatacgactttcaccgtcacaccagaacagacgctcaaggctcctatcatcatcaata |
35242277 |
T |
|
| Q |
118 |
cagtgtctcacaaacatacgagggtctttggtgcaaagatctcgaagatactcaactgcacca |
180 |
Q |
| |
|
|| | ||||||||||| |||| || || |||||||||||||||||||| | |||||||||| |
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|
| T |
35242278 |
caacttttcacaaacataagaggatcgtttgtgcaaagatctcgaagatagttaactgcacca |
35242340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 21860231 - 21860131
Alignment:
| Q |
306 |
caaaatatctaaatggactcgaaattttgcgttacacccacatcttgtttcaattttttgctcgtgctttcgggtttccatagttagtcccctatcctcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||| |||||||||||| |
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|
| T |
21860231 |
caaaatatctaaatggactcgaaattttgcattacacccacatcttgtttcattttttggctcgcgctttcgggtttccatggttaaccccctatcctcc |
21860132 |
T |
|
| Q |
406 |
c |
406 |
Q |
| |
|
| |
|
|
| T |
21860131 |
c |
21860131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 458 - 626
Target Start/End: Complemental strand, 21860124 - 21859956
Alignment:
| Q |
458 |
gatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaaccaagagtaaaacatgtaggcaacctccaacccaacaaactcatacct |
557 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| ||| ||||| ||||||||||||| || | || ||||| ||||| |||||||| ||||| || |
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|
| T |
21860124 |
gatccctaaccacttggcccttacgaactgaaaatcccgacgttctaccaaaccaagagtagaaaagataagcaacatccaatccaacaaattcatatct |
21860025 |
T |
|
| Q |
558 |
ttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatcttttataacaat |
626 |
Q |
| |
|
|| |||||| | || ||||| ||||| | ||||||||| | |||||| ||||| |||||||| ||||| |
|
|
| T |
21860024 |
ctctacatcagccaagcaaaaattttccaagtcaatcttcattatatcaaccatttcttttatgacaat |
21859956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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