View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11519_low_13 (Length: 430)

Name: NF11519_low_13
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11519_low_13
NF11519_low_13
[»] chr3 (46 HSPs)
chr3 (17-358)||(7333941-7334282)
chr3 (43-347)||(2476653-2476977)
chr3 (17-221)||(7324115-7324319)
chr3 (19-221)||(2644040-2644244)
chr3 (55-221)||(7442697-7442865)
chr3 (17-221)||(2492263-2492467)
chr3 (18-221)||(754293-754497)
chr3 (17-221)||(2635884-2636090)
chr3 (18-221)||(9565513-9565717)
chr3 (59-221)||(2502365-2502527)
chr3 (54-221)||(2631520-2631688)
chr3 (54-221)||(9561705-9561873)
chr3 (236-354)||(2659073-2659191)
chr3 (19-135)||(7318596-7318715)
chr3 (17-221)||(2658829-2659034)
chr3 (228-354)||(2644275-2644401)
chr3 (236-354)||(7324352-7324470)
chr3 (241-342)||(9561911-9562012)
chr3 (291-354)||(4142110-4142173)
chr3 (127-221)||(768120-768214)
chr3 (299-355)||(746367-746423)
chr3 (307-354)||(989408-989455)
chr3 (167-221)||(666992-667046)
chr3 (284-354)||(2456261-2456331)
chr3 (226-268)||(2502282-2502324)
chr3 (304-354)||(3754612-3754662)
chr3 (308-354)||(4157937-4157983)
chr3 (17-86)||(666842-666911)
chr3 (281-354)||(2492094-2492167)
chr3 (242-335)||(2635752-2635845)
chr3 (301-354)||(9565815-9565868)
chr3 (379-420)||(9595167-9595208)
chr3 (17-92)||(767953-768029)
chr3 (306-354)||(44001607-44001655)
chr3 (303-354)||(2502160-2502211)
chr3 (162-221)||(9594435-9594494)
chr3 (304-354)||(2686301-2686351)
chr3 (284-354)||(7942497-7942567)
chr3 (304-354)||(9587174-9587224)
chr3 (57-142)||(9608052-9608138)
chr3 (312-354)||(13498236-13498278)
chr3 (310-354)||(2442051-2442095)
chr3 (380-420)||(2659669-2659709)
chr3 (310-354)||(2696727-2696771)
chr3 (314-358)||(7442976-7443020)
chr3 (169-221)||(9587018-9587070)
[»] chr4 (4 HSPs)
chr4 (59-221)||(41456256-41456418)
chr4 (316-356)||(11032920-11032960)
chr4 (286-358)||(20016156-20016228)
chr4 (291-356)||(20019748-20019813)
[»] scaffold0097 (2 HSPs)
scaffold0097 (17-107)||(34243-34332)
scaffold0097 (160-219)||(34168-34227)
[»] scaffold0044 (2 HSPs)
scaffold0044 (284-354)||(89155-89225)
scaffold0044 (119-219)||(89311-89411)
[»] chr5 (6 HSPs)
chr5 (56-146)||(20301675-20301766)
chr5 (56-146)||(20306088-20306179)
chr5 (56-146)||(20310492-20310583)
chr5 (291-354)||(11081825-11081888)
chr5 (307-342)||(23766854-23766889)
chr5 (307-342)||(23816702-23816737)
[»] chr7 (2 HSPs)
chr7 (55-141)||(39299222-39299309)
chr7 (316-354)||(1421170-1421208)
[»] chr1 (2 HSPs)
chr1 (284-342)||(51381424-51381482)
chr1 (317-354)||(24629213-24629250)
[»] chr6 (1 HSPs)
chr6 (306-342)||(24417477-24417513)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 7333941 - 7334282
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7333941 acaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagg 7334040  T
Q  117 gcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7334041 gcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaac 7334140  T
Q  217 caactcgttataacactccaccaacagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7334141 caactcgttataacactccaccaacagttggtcatcctctgaaatatataaaagagaatcggcttctaaaccacgatctttcaggttaggaatagtgtac 7334240  T
Q  317 aatttagtccaagactctttatttccgtagtccttcatgatc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7334241 aatttagtccaagactctttatttccgtagtccttcatgatc 7334282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 43 - 347
Target Start/End: Complemental strand, 2476977 - 2476653
Alignment:
Q  43 tcaaagcagggataaaataaataacacaaataa--aaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtaga 140  Q
    |||||||||| ||||||||||||||||||  ||  |||||||||||||||||||||  |||||||||||||||| || ||||||||||||||||||||||    
T  2476977 tcaaagcaggcataaaataaataacacaacaaagaaaactaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtaga 2476878  T
Q  141 catttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaactcgttat------------- 227  Q
    ||||||||| |||||| | ||| ||||||||||||||||| |||||  ||||||||||||||| ||| |||||||||||||  | ||                 
T  2476877 catttgagtatatcaggtcatatttgttttgaaactcaggaatattcgaagtaccagttttggaatcgtaaacaaccaacttatcattgtcactttcaat 2476778  T
Q  228 -----aacactccaccaacagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaattta 322  Q
          |||||| |||||||||||||||||||| ||||| ||||||  |   | || ||||||||| ||||||| || |||||||| |||||||||||||    
T  2476777 ctcaagacactcgaccaacagttggtcatcctcagaaatgtataaagcattgtaggcttctaaaccccgatcttgcatgttaggaacagtgtacaattta 2476678  T
Q  323 gtccaagactctttatttccgtagt 347  Q
    |||||||||||||||||||| ||||    
T  2476677 gtccaagactctttatttccatagt 2476653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 7324115 - 7324319
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagg 116  Q
    ||||||||| |||||||||  || ||||| ||||||  ||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |    
T  7324115 acaatgatccaacaagtcaacaaaaatcagagcaggcgtaaaacaaacaacacaaacaaaaactaaccatatatatgttgcagttgaatcccagcttaag 7324214  T
Q  117 gcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaac 216  Q
    | |||||||||||||||||||||||||||| |  |||| ||| ||||||||||||||||||||| ||||| |||||||||||||||| ||| |||| |||    
T  7324215 gtgatatcaaactctcaatgtagacatttgggcatatccgttcatagttgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaagaac 7324314  T
Q  217 caact 221  Q
    |||||    
T  7324315 caact 7324319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 2644040 - 2644244
Alignment:
Q  19 aatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagg 116  Q
    ||||||||||||||| || || ||| | |||||| |||| |||  ||||||||| | |||||||||||||||||||||||| |||||||||||||||| |    
T  2644040 aatgatctaacaagtaatcaagaattagagcaggcataacatataaataacacagacaaaaactaaccatatatatgttgcagttgaatcccagcttaag 2644139  T
Q  117 gcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaac 216  Q
    | ||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||| ||||| || || |||||||||| ||||||||||||    
T  2644140 gtgatatcaaactctcaatgtagacatttgagtatatcaggtcatatttgttttgaaactcaggaatattcaatgtgccagttttggaatcataaacaac 2644239  T
Q  217 caact 221  Q
    |||||    
T  2644240 caact 2644244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 7442697 - 7442865
Alignment:
Q  55 taaaataaataacacaaataaaa--actaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtcta 152  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7442697 taaaataaataacacaaataaaaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtata 7442796  T
Q  153 tcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
    || ||| |||| | |||| ||||||||| ||||| |||||||| || |||| |||||||||| ||||||    
T  7442797 tcggttcataggttttttcaaactcaggaatattcaaagtacccgtcttggaatcataaacagccaact 7442865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 2492467 - 2492263
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagg 116  Q
    ||||||||| ||||||||| ||| ||||| |||| |  |||||||||||||||| | ||||||||||||||||||||  || |||||||||||||||| |    
T  2492467 acaatgatccaacaagtcaagaaaaatcagagcatgcgtaaaataaataacacacacaaaaactaaccatatatatgccgcagttgaatcccagcttaag 2492368  T
Q  117 gcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaac 216  Q
    | ||||||||||||||||||||||||||||||| |  | ||| |||||||||||||||||| || ||||| |||||| |||| |||| ||||||||||||    
T  2492367 gtgatatcaaactctcaatgtagacatttgagtattccggttcatagttgttttgaaactctggaatattcaaagtatcagtcttggaatcataaacaac 2492268  T
Q  217 caact 221  Q
    |||||    
T  2492267 caact 2492263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 754293 - 754497
Alignment:
Q  18 caatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaa-ataaaaactaaccatatatatgttgccgttgaatcccagcttagg 116  Q
    |||||||| ||||| |||  || ||||||| |||  |||||||||||||||||| | ||||||||||||| |||||||||| |||||||||  ||||| |    
T  754293 caatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacaatacaaaaactaaccatgtatatgttgcagttgaatccttgcttaag 754392  T
Q  117 gcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaac 216  Q
    | ||||||||||||||||||||||||| |||| ||||  ||| ||||||||||||||||||||| ||||| | ||||||||| |||| ||||||||||||    
T  754393 gtgatatcaaactctcaatgtagacatctgagcctatttgttcatagttgttttgaaactcaggaatattcagagtaccagtcttggaatcataaacaac 754492  T
Q  217 caact 221  Q
    |||||    
T  754493 caact 754497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 2636090 - 2635884
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaa--taaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagctta 114  Q
    |||||||||||||||||||  || ||||| |  ||| |||| |  ||||||||||| | |||||||||||||||||||||||| | ||||||||| ||||    
T  2636090 acaatgatctaacaagtcaccaagaatcagattaggcataatacataaataacacagacaaaaactaaccatatatatgttgcagatgaatcccaactta 2635991  T
Q  115 gggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaaca 214  Q
     || |||||||||||| ||||||||||||||| || |||| ||| |||||||||||||||||| || ||||||||||||||| |||||| ||| ||||||    
T  2635990 aggtgatatcaaactcgcaatgtagacatttgggtatatctgttcatagttgttttgaaactcgggaatatttaaagtaccatttttggaatcgtaaaca 2635891  T
Q  215 accaact 221  Q
    |||||||    
T  2635890 accaact 2635884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 9565513 - 9565717
Alignment:
Q  18 caatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaa-ataaaaactaaccatatatatgttgccgttgaatcccagcttagg 116  Q
    |||||||| ||||| |||  || ||||||| |||  |||||||||||||||||  | |||||||||||||||  |||||||  ||||||||  || || |    
T  9565513 caatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacagtaaaaaaactaaccatatcaatgttgcatttgaatccgtgcctaag 9565612  T
Q  117 gcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaac 216  Q
    | |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||||| || |||| ||||||||||||    
T  9565613 gtgatatcaaactctcaatgtagacatttgaggctacctgtttatagttgttttgaaactcaggaatattcaaagtaccggtcttggaatcataaacaac 9565712  T
Q  217 caact 221  Q
    |||||    
T  9565713 caact 9565717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 2502527 - 2502365
Alignment:
Q  59 ataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtt 158  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||  ||||| || |||||||||||||||||||||| | |||  ||| |  | |    
T  2502527 ataaataacagaaattaaaactaaccatatatatgttgcagttgaatccatgcttaaggtgatatcaaactctcaatgtagaaaattgcatctctatgct 2502428  T
Q  159 tatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
     ||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||| ||||    
T  2502427 catagttgttttgaaactcaggaatattcaaagtgccagttttggaatcataaacaacaaact 2502365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 2631688 - 2631520
Alignment:
Q  54 ataaaataaataacacaaata-aaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtcta 152  Q
    ||||||||||||||| ||| | |||||||||||| |||||||||| |||||||||||||||| || ||||| ||||||||||||||||| |||  |  ||    
T  2631688 ataaaataaataacataaacataaaactaaccatgtatatgttgcagttgaatcccagcttaaggtgatattaaactctcaatgtagactttttgggata 2631589  T
Q  153 tcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
    |  ||| ||||||||||||||||||| | ||||| ||| |||||||||||| ||| || ||||||||||    
T  2631588 tatgttcatagttgttttgaaactcaagaatattaaaaataccagttttggaatcgtagacaaccaact 2631520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 9561705 - 9561873
Alignment:
Q  54 ataaaataaataacacaaataaaa-actaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtcta 152  Q
    |||||||||  |||||||| |||| |||||||||||||||||||| ||||||||   ||||| || |||||||||||||||||||||| ||||  |  ||    
T  9561705 ataaaataatcaacacaaacaaaaaactaaccatatatatgttgcagttgaatcaatgcttaaggtgatatcaaactctcaatgtagaaattttggcata 9561804  T
Q  153 tcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
    || | | ||||||||||||||||||||| ||||| ||||||||||| || | ||| |||||||||||||    
T  9561805 tctgatcatagttgttttgaaactcaggaatattcaaagtaccagtcttagaatcgtaaacaaccaact 9561873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 354
Target Start/End: Original strand, 2659073 - 2659191
Alignment:
Q  236 accaacagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctt 335  Q
    ||||| |||||||||||||||||||||||||||     ||||| ||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||    
T  2659073 accaatagttggtcatcctctgaaatatataaagctctatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactctt 2659172  T
Q  336 tatttccgtagtccttcat 354  Q
     |||||| || ||||||||    
T  2659173 gatttccatactccttcat 2659191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 7318596 - 7318715
Alignment:
Q  19 aatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaa-actaaccatatatatgttgccgttgaatcccagcttag 115  Q
    |||||||||||||||||| || ||||| |||||| |||| |||  ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||     
T  7318596 aatgatctaacaagtcatcaagaatcagagcaggcataacatataaataacacaaacaaaaaactaaccatatatatgttgcagttgaatcccagcttaa 7318695  T
Q  116 ggcgatatcaaactctcaat 135  Q
    || ||||| |||||||||||    
T  7318696 ggtgatattaaactctcaat 7318715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 2658829 - 2659034
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaaactaaccatatatatgttgccgttgaatcccagctta 114  Q
    |||||||||||||||||||  || ||||| |||||| |||| |||  ||||||||||| |||||||||||||||||||||||| ||||||||   |||||    
T  2658829 acaatgatctaacaagtcaccaa-aatcagagcaggcataacatataaataacacaaacaaaaactaaccatatatatgttgcagttgaatcaatgctta 2658927  T
Q  115 gggcgatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaaca 214  Q
     || ||||| | ||||||||||||||| |  |  | | |  |||||||||||||| ||||| |||| | ||| || || |||| ||| | ||||||||||    
T  2658928 aggtgatatgagactctcaatgtagacttcggcatgtgtatgtttatagttgtttcgaaacacaggaaaattcaatgtgccagctttagaatcataaaca 2659027  T
Q  215 accaact 221  Q
    |||||||    
T  2659028 accaact 2659034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 354
Target Start/End: Original strand, 2644275 - 2644401
Alignment:
Q  228 aacactccaccaacagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtcca 327  Q
    |||||||||||||||||||||||||||||||||||||||||     |  || ||  |||    |||||| ||||||||||||||||||||||||||||||    
T  2644275 aacactccaccaacagttggtcatcctctgaaatatataaagctctactggctttcaaattctgatcttgcaggttaggaatagtgtacaatttagtcca 2644374  T
Q  328 agactctttatttccgtagtccttcat 354  Q
    |||||||| |||||| || ||||||||    
T  2644375 agactcttgatttccatactccttcat 2644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 354
Target Start/End: Original strand, 7324352 - 7324470
Alignment:
Q  236 accaacagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctt 335  Q
    ||||| |||||||||||||| ||||| ||||||  |   | || ||||||||| ||||||| || |||||||| | | ||||||||||||||||||||||    
T  7324352 accaaaagttggtcatcctcagaaatgtataaagcatcgtaggcttctaaaccgcgatcttgcatgttaggaacactatacaatttagtccaagactctt 7324451  T
Q  336 tatttccgtagtccttcat 354  Q
    |||||||||||||||||||    
T  7324452 tatttccgtagtccttcat 7324470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 9561911 - 9562012
Alignment:
Q  241 cagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttattt 340  Q
    ||||||||||||||| ||| ||||||||| || ||  | |||||||||  |||||| || |||||||| | |||| ||||||||||||||||||| ||||    
T  9561911 cagttggtcatcctcagaactatataaaacagtataagcttctaaaccgtgatcttgcatgttaggaacactgtataatttagtccaagactcttgattt 9562010  T
Q  341 cc 342  Q
    ||    
T  9562011 cc 9562012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 4142110 - 4142173
Alignment:
Q  291 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||| ||| || |||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  4142110 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcat 4142173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 768120 - 768214
Alignment:
Q  127 actctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
    ||||||||||||||| |||| ||  ||| |   ||||||||||||||||||| | ||||| |||||| ||||||||| ||| |||||||||||||    
T  768120 actctcaatgtagacttttgggttcatctgagcatagttgttttgaaactcaagaatattaaaagtagcagttttggaatcgtaaacaaccaact 768214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 746367 - 746423
Alignment:
Q  299 aggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatg 355  Q
    |||||||||| | |||||||||||||||||||||||| |||||| || |||||||||    
T  746367 aggttaggaacaatgtacaatttagtccaagactcttgatttccatactccttcatg 746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 989455 - 989408
Alignment:
Q  307 aatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||||| ||||||||||||||||||||||||||||||| || |||||    
T  989455 aatagtgaacaatttagtccaagactctttatttccgtactctttcat 989408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 666992 - 667046
Alignment:
Q  167 ttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
    |||||||||||||| ||||| ||||||| ||| |||| |||||||||||||||||    
T  666992 ttttgaaactcaggaatattcaaagtactagtcttggaatcataaacaaccaact 667046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 2456331 - 2456261
Alignment:
Q  284 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||||||| | ||| || |||||||  |||||||||||||||||| ||||||||||| || ||||||||    
T  2456331 aaaccacgatatctcatgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcat 2456261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 2502324 - 2502282
Alignment:
Q  226 ataacactccaccaacagttggtcatcctctgaaatatataaa 268  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  2502324 ataacatttcaccaacagttggtcatcctctgaaatatataaa 2502282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 3754662 - 3754612
Alignment:
Q  304 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||||||  |||||||||||||||||||||||||||| || ||||||||    
T  3754662 aggaatagtaaacaatttagtccaagactctttatttccatattccttcat 3754612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 4157937 - 4157983
Alignment:
Q  308 atagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||    
T  4157937 atagtgaacaatttagtccaagactctttatttccatattccttcat 4157983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 666842 - 666911
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccat 86  Q
    ||||||||| |||||||||  || |||||||| | | ||||||||||| ||||||| |||||||||||||    
T  666842 acaatgatccaacaagtcaccaagaatcaaaggaagcataaaataaattacacaaacaaaaactaaccat 666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 2492167 - 2492094
Alignment:
Q  281 tctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||||| ||||||| || |||||||| | | |||||||||||||||||||||  |||||| || ||||||||    
T  2492167 tctaaaccccgatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcat 2492094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 335
Target Start/End: Complemental strand, 2635845 - 2635752
Alignment:
Q  242 agttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctt 335  Q
    |||||||||||||| ||||||||||||     || |  ||||||||| |||| || || |||||||| | ||||||||||||||||||||||||    
T  2635845 agttggtcatcctcagaaatatataaagctttatagacttctaaaccccgatgttgcatgttaggaacactgtacaatttagtccaagactctt 2635752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 9565815 - 9565868
Alignment:
Q  301 gttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||||| | |||||||||||||||||||||||| || |||||| ||||||||    
T  9565815 gttaggaacaatgtacaatttagtccaagactcttgatctccgtactccttcat 9565868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 9595167 - 9595208
Alignment:
Q  379 atccatttgtgagagtaataggagtgtaaagttgtgtctgtg 420  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  9595167 atccatttgtgagagtattaggagggtaaagttgtgtctgtg 9595208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 767953 - 768029
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacaca-aataaaaactaaccatatatat 92  Q
    ||||||||| ||||| |||  || |||||||||||  ||||||||||||||||| |  |||||||||||||||||||    
T  767953 acaatgatccaacaaatcaccaagaatcaaagcagatataaaataaataacacagacaaaaaactaaccatatatat 768029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 44001655 - 44001607
Alignment:
Q  306 gaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||||||||| ||||||||||||||||||| |||| || ||||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcat 44001607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 2502211 - 2502160
Alignment:
Q  303 taggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||||||||||||| |||||||||| |||| |||||||| || ||||||||    
T  2502211 taggaatagtgtacagtttagtccaaaactccttatttccatactccttcat 2502160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 9594435 - 9594494
Alignment:
Q  162 agttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
    ||||||||||||||||| | ||||| |||||| ||||||||| ||| |||||| ||||||    
T  9594435 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaact 9594494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 2686301 - 2686351
Alignment:
Q  304 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||||||| |||||||| ||||||||||||| ||||| || ||||||||    
T  2686301 aggaatagtgaacaatttattccaagactctttttttccatattccttcat 2686351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 7942567 - 7942497
Alignment:
Q  284 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||| ||||||| || || ||||| | ||||||||||| |||||||||||||||| || || ||||||||    
T  7942567 aaacctcgatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcat 7942497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 9587174 - 9587224
Alignment:
Q  304 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||||| |||||||||| ||||||| |||||||||||| || ||||||||    
T  9587174 aggaatattgtacaattttgtccaaggctctttatttccatattccttcat 9587224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 9608052 - 9608138
Alignment:
Q  57 aaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagaca 142  Q
    |||| ||||| ||||||| |||||||| |||||||||| ||  ||||||| || ||||| || ||||||||||||||  ||||||||    
T  9608052 aaattaataatacaaatagaaactaacaatatatatgtagcacttgaatctcatgcttaaggtgatatcaaactctcgttgtagaca 9608138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 13498278 - 13498236
Alignment:
Q  312 tgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  13498278 tgtataatttagtccaagactctttatttccatattccttcat 13498236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 2442095 - 2442051
Alignment:
Q  310 agtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||| |||||||||||||||| ||||||||||| || ||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcat 2442051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 2659669 - 2659709
Alignment:
Q  380 tccatttgtgagagtaataggagtgtaaagttgtgtctgtg 420  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  2659669 tccatttgtgagagtattaggaatgtaaagttgtgtttgtg 2659709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 2696727 - 2696771
Alignment:
Q  310 agtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||| |||||||| ||||||||||||||||||| || ||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcat 2696771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 7442976 - 7443020
Alignment:
Q  314 tacaatttagtccaagactctttatttccgtagtccttcatgatc 358  Q
    ||||| |||||||||||||||| |||||| || ||||||||||||    
T  7442976 tacaacttagtccaagactcttgatttccatactccttcatgatc 7443020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 9587018 - 9587070
Alignment:
Q  169 ttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
    |||||||||||| ||||| ||||||||| |||||| |||||| |||| |||||    
T  9587018 ttgaaactcaggtatattaaaagtaccatttttggaatcatagacaaacaact 9587070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 41456418 - 41456256
Alignment:
Q  59 ataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtctatcagtt 158  Q
    |||||||||||||| ||||| |||||||||  | |||||  |||||| |  ||||| || ||||| |||||||||||||||| ||| | |||| || |||    
T  41456418 ataaataacacaaacaaaaattaaccatatcaacgttgcatttgaattcgtgcttaaggtgatattaaactctcaatgtagatattagggtctgtccgtt 41456319  T
Q  159 tatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 221  Q
     ||||||||||||||||||||| ||||| ||||||||| | |||  |||||||||||||||||    
T  41456318 catagttgttttgaaactcaggaatattcaaagtaccaatcttgaaatcataaacaaccaact 41456256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 11032960 - 11032920
Alignment:
Q  316 caatttagtccaagactctttatttccgtagtccttcatga 356  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatga 11032920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 20016156 - 20016228
Alignment:
Q  286 accacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatc 358  Q
    |||| |||||| || ||||| || |||| ||||||||||||||||||||| | |||| || ||||||||||||    
T  20016156 accatgatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatc 20016228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 20019748 - 20019813
Alignment:
Q  291 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatga 356  Q
    |||||| || ||||| || |||| ||||||||||||||||||||| | |||| || ||||||||||    
T  20019748 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatga 20019813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 34332 - 34243
Alignment:
Q  17 acaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcc 107  Q
    ||||||||| |||||||||  || ||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  34332 acaatgatcaaacaagtcaccaa-aatcagagcaggcataacataaataacacaaacaaaaactaaccatatatatgttgcagttgaatcc 34243  T

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Target: scaffold0097; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 34227 - 34168
Alignment:
Q  160 atagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaa 219  Q
    ||||| ||||||||||| ||| |||||  |||| |||||||||| |||||||||||||||    
T  34227 atagtcgttttgaaactgaggaatattcgaagtgccagttttggtatcataaacaaccaa 34168  T

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Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 89225 - 89155
Alignment:
Q  284 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||||||||||| || || ||||| | ||||||||||||||||||||||||||||||| || ||||||||    
T  89225 aaaccacgatcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcat 89155  T

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Target: scaffold0044; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 89411 - 89311
Alignment:
Q  119 gatatcaaactctcaatgtagacatttgagtctatcagtttatagttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaacca 218  Q
    ||||||||||||||||||||||| |||| ||| ||| |   || | ||||||||| | |||| || || ||||||||| |||| | ||||||||||||||    
T  89411 gatatcaaactctcaatgtagacttttgggtccatccgacgattgatgttttgaatcacaggaatcttcaaagtaccattttttgaatcataaacaacca 89312  T
Q  219 a 219  Q
    |    
T  89311 a 89311  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 20301766 - 20301675
Alignment:
Q  56 aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagacatttg 146  Q
    ||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| ||||||||||||||||| ||||    
T  20301766 aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20301675  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 20306179 - 20306088
Alignment:
Q  56 aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagacatttg 146  Q
    ||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| ||||||||||||||||| ||||    
T  20306179 aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20306088  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 20310583 - 20310492
Alignment:
Q  56 aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagacatttg 146  Q
    ||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| ||||||||||||||||| ||||    
T  20310583 aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20310492  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 11081888 - 11081825
Alignment:
Q  291 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||| ||| || |||||||||  |||||||||||||||||||||||||||| || ||||||||    
T  11081888 gatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcat 11081825  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 23766854 - 23766889
Alignment:
Q  307 aatagtgtacaatttagtccaagactctttatttcc 342  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttcc 23766889  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 23816702 - 23816737
Alignment:
Q  307 aatagtgtacaatttagtccaagactctttatttcc 342  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttcc 23816737  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 39299309 - 39299222
Alignment:
Q  55 taaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaatgtagac 141  Q
    |||||||||||||||||| ||||||||||||| || || |||  |||||||| || ||||| ||  ||||||| ||||||||||||||    
T  39299309 taaaataaataacacaaacaaaaactaaccatgtagatcttgtagttgaatctcatgcttaaggtaatatcaagctctcaatgtagac 39299222  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 1421170 - 1421208
Alignment:
Q  316 caatttagtccaagactctttatttccgtagtccttcat 354  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcat 1421208  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 51381424 - 51381482
Alignment:
Q  284 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttcc 342  Q
    ||||||||| ||| || || ||||||| || ||||||||||||||||||||| ||||||    
T  51381424 aaaccacgaccttccatgtaaggaatactgaacaatttagtccaagactcttcatttcc 51381482  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 24629213 - 24629250
Alignment:
Q  317 aatttagtccaagactctttatttccgtagtccttcat 354  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcat 24629250  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 24417477 - 24417513
Alignment:
Q  306 gaatagtgtacaatttagtccaagactctttatttcc 342  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  24417477 gaatactgtacaatttagtccaagattctttatttcc 24417513  T

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