View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_14 (Length: 420)
Name: NF11519_low_14
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 45251549 - 45251928
Alignment:
| Q |
16 |
gaagaagaatactgagtcatttggagtgagttggagtgaggtaggtgactcaggaagaacaagtttgaatggtgaaggtgggtcattgagtttcaggtta |
115 |
Q |
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| T |
45251549 |
gaagaagaataccgagtcatttggagtgagttggagcgaggtaggtgactcaggaagaacaagtttgaatggtgaaggtgggtcattgagtttcaggtta |
45251648 |
T |
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| Q |
116 |
gggaatcttagtaagtatgtggagggagaacaagccgcggccggttggccggtttggcttagcgcggttgcttccgaagctatccatggttgggttcctc |
215 |
Q |
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| T |
45251649 |
gggaatcttagtaagtatgtggagggagaacaagccgcggctggttggccggtttggcttagcgcggttgcttccgaagctattcatggttgggttcctc |
45251748 |
T |
|
| Q |
216 |
tccgttctgatgcatttgaaaaacttgacaaggtttgtttcttgtaaatctcatgttagaacattctcaatcttgttcaagtgattgtaaatgtattata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45251749 |
tccgttctgatgcatttgaaaaacttgacaaggtttgtttcttgtaaatctcatgttagaacattctcaatcttgttcaagtgattgtaaatgtattata |
45251848 |
T |
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| Q |
316 |
tggattatggtatgtttgcttttctgagttatctataataaactgctcaactgaacacaactgtatgaatagattgggcagggtacatat |
405 |
Q |
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| T |
45251849 |
tggattatggtatgtttgcttttctgagttatctataataaactgct----------caactgtatgaatagattgggcagggtacatat |
45251928 |
T |
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