View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_low_15 (Length: 414)
Name: NF11519_low_15
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 39584151 - 39584553
Alignment:
| Q |
1 |
aagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctggcttgaattgtgttgggtcactccatagttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584151 |
aagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctggcttgaattgtgttgggtcactccatagttgaga |
39584250 |
T |
|
| Q |
101 |
atctctgtgaattgcccaagcattaaccaataaaatagtgttttttgggacattataacctcctatggtgcaatcttgtgaagaaaaatgaggagccaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584251 |
atctctgtgaattgcccaagcattaaccaataaaatagtgttttttgggacaatataacctcctatggtgcaatcttgtgaagaaaaatgaggagccaac |
39584350 |
T |
|
| Q |
201 |
aatgcaaatgcaggatgcaatcgaaatgtctcgtggattatattttgtaggtaggggagttttgaaatgtctgactcttctactaagtgatcttgtccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584351 |
aatgcaaatgcaggatgcaatcgaaatgtctcgtggattatattttgtaggtaggggagttttgaaatgtctgactcttctactaagtgatcttgtccta |
39584450 |
T |
|
| Q |
301 |
tgtttgtatctatttcatcccttgctttctttaacacttctggatgatttagcaaagcagacattgcccattctagagttgtagctgatgtctctgctcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
39584451 |
tgtttgtatctatttcatcccttgctttctttaacacttctggatgatttagcaaagcagacattgcccattctagagttgtagctgatgtttctgttcc |
39584550 |
T |
|
| Q |
401 |
tcc |
403 |
Q |
| |
|
||| |
|
|
| T |
39584551 |
tcc |
39584553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 379
Target Start/End: Original strand, 12151723 - 12151875
Alignment:
| Q |
227 |
tgtctcgtggattatattttgtaggtaggggagttttgaaatgtctgactcttctactaagtgatcttgtcctatgtttgtatctatttcatcccttgct |
326 |
Q |
| |
|
|||||||| ||| || ||||| | ||| || || ||||||||||||||||| ||||| || |||| | ||||| || || | || ||||||| ||||| |
|
|
| T |
12151723 |
tgtctcgtagataatgttttgaatgtatggaagatttgaaatgtctgactcatctaccaaacgatcattgcctattttggtgtataattcatcctttgct |
12151822 |
T |
|
| Q |
327 |
ttctttaacacttctggatgatttagcaaagcagacattgcccattctagagt |
379 |
Q |
| |
|
|| ||||| | ||||| | ||||| ||||||||||||||||| |||||||| |
|
|
| T |
12151823 |
ttttttaatatctctgggttatttaataaagcagacattgcccactctagagt |
12151875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38974771 - 38974843
Alignment:
| Q |
1 |
aagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctggcttgaa |
73 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| || ||||||||||| ||||| ||||| |||||||| |
|
|
| T |
38974771 |
aagcccttcttcctaacccaaatgcaatcaacttgtctaactctccttctttctcaaacctctcaggcttgaa |
38974843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University