View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11519_low_18 (Length: 392)

Name: NF11519_low_18
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11519_low_18
NF11519_low_18
[»] chr6 (1 HSPs)
chr6 (58-385)||(17591585-17591905)
[»] chr5 (1 HSPs)
chr5 (81-145)||(11970360-11970424)
[»] chr7 (3 HSPs)
chr7 (81-145)||(44057542-44057606)
chr7 (99-145)||(39136029-39136075)
chr7 (106-145)||(4088562-4088601)
[»] chr8 (2 HSPs)
chr8 (146-223)||(33023785-33023861)
chr8 (84-145)||(41178185-41178246)
[»] chr2 (2 HSPs)
chr2 (104-145)||(44194926-44194967)
chr2 (106-145)||(4603219-4603258)
[»] chr3 (2 HSPs)
chr3 (77-145)||(54918248-54918316)
chr3 (81-133)||(46160846-46160898)
[»] chr1 (2 HSPs)
chr1 (81-145)||(6596644-6596708)
chr1 (108-145)||(18428364-18428401)
[»] chr4 (1 HSPs)
chr4 (82-145)||(1019033-1019096)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 58 - 385
Target Start/End: Complemental strand, 17591905 - 17591585
Alignment:
Q  58 aaatgtaaaaatctactaactctgtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaagagaaattatca 157  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17591905 aaatgtaaaaatctactaactctgtttcaaattgagtgtcgtttatgatttttacacacaaattaagtaatgtaataataatgtcaaacagaaattatca 17591806  T
Q  158 tgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataatgcaaagagtatggaataaggtacatcgaagtcaaaatt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    ||||||||| |    
T  17591805 tgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataatacaaagagtatggaataaggtac----aagtcaaaaat 17591710  T
Q  258 agtgaaattataaagcctgcaagagagaaattagtattgatccaaaggcttctctgttagaagctgttaccatttgtttgtagaggaatttgagactgca 357  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17591709 agtgaaattataaagcctgcaagagagaa---agtattgatccaaaggcttctctgttagaagctgttaccatttgtttgtagaggaatttgagactgca 17591613  T
Q  358 gatcagatgtccgttgagttcatctctg 385  Q
    ||||||||||||||||||||||| ||||    
T  17591612 gatcagatgtccgttgagttcatgtctg 17591585  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 11970424 - 11970360
Alignment:
Q  81 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  11970424 gttttaaaatgagtgtcatttaagatttttacacacaaattaagaaatgtaataatgatgtcaaa 11970360  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 44057542 - 44057606
Alignment:
Q  81 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    |||||||| |||||||  |||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  44057542 gtttcaaaatgagtgttgtttaagatttttacacacaaattaagaaatgtaataatgatgtcaaa 44057606  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 39136029 - 39136075
Alignment:
Q  99 tttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  39136029 tttaagatttttacacataaattaagaaatgtaataataatgtcaaa 39136075  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 4088562 - 4088601
Alignment:
Q  106 tttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  4088562 tttttacacacaaattaagaaatgtaataatgatgtcaaa 4088601  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 33023785 - 33023861
Alignment:
Q  146 gagaaattatcatgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataatgcaa 223  Q
    ||||| |||||||||| ||||||| | |||||||||||||||||| |||||| ||| |||| ||| ||||||||||||    
T  33023785 gagaagttatcatgtg-ctaaatccactatataaattgcaaccagaatttcagttgctacatatatattataatgcaa 33023861  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 41178185 - 41178246
Alignment:
Q  84 tcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    ||||| || ||||| |||| | ||||||||||||||||||| ||||||||||| ||||||||    
T  41178185 tcaaaatgggtgtcgtttaaggtttttacacacaaattaagaaatgtaataatgatgtcaaa 41178246  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 44194926 - 44194967
Alignment:
Q  104 gatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  44194926 gatttttacacacaaattaagaaatgtaataatgatgtcaaa 44194967  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 4603219 - 4603258
Alignment:
Q  106 tttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  4603219 tttttatacacaaattaagaaatgtaataataatgtcaaa 4603258  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 54918316 - 54918248
Alignment:
Q  77 ctctgtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    |||||||||||| ||||| || |||| | |||||||||| |||||||| ||| ||||||| ||||||||    
T  54918316 ctctgtttcaaaatgagtatcgtttaaggtttttacacataaattaagaaatttaataatgatgtcaaa 54918248  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 46160898 - 46160846
Alignment:
Q  81 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaat 133  Q
    |||||||| ||| |||| |||| | ||||||||||||||||||| ||||||||    
T  46160898 gtttcaaaatgaatgtcctttaaggtttttacacacaaattaagaaatgtaat 46160846  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 6596708 - 6596644
Alignment:
Q  81 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    |||||||| |||||||  |||| |||||||| |||||||||||| |||||| || ||||||||||    
T  6596708 gtttcaaaatgagtgttgtttaagatttttagacacaaattaagaaatgtactagtaatgtcaaa 6596644  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 18428364 - 18428401
Alignment:
Q  108 tttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  18428364 tttacacacaaattaagaaatgtaataatgatgtcaaa 18428401  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 1019033 - 1019096
Alignment:
Q  82 tttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 145  Q
    ||||||| |||||||| |||| | |||||||||||||||| || |||||||||||  |||||||    
T  1019033 tttcaaaatgagtgtcgtttaaggtttttacacacaaatttagaaatgtaataatggtgtcaaa 1019096  T

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