View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_19 (Length: 388)
Name: NF11519_low_19
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 150 - 381
Target Start/End: Original strand, 6030479 - 6030709
Alignment:
| Q |
150 |
aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg |
249 |
Q |
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| T |
6030479 |
aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg |
6030578 |
T |
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| Q |
250 |
tcttactgctatactatttttcaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgc |
349 |
Q |
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| T |
6030579 |
tcttactgctact-tattttacaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgc |
6030677 |
T |
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| Q |
350 |
attactttcattgttttcctgccttctctgct |
381 |
Q |
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| T |
6030678 |
attactttcattgttttccttccttctatgct |
6030709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 6030137 - 6030285
Alignment:
| Q |
5 |
gactttatgcatgttatcca-ctactacgatgattaattacttggaatttttgggtaatgtttttccttcaaagatgttattataggaatcgttttgcaa |
103 |
Q |
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| T |
6030137 |
gactatatgcatgttttccatctcctacgatggctaaatacttggaattattaggaaatgtttttccttcaaagatgttactataggaaacgttttgcaa |
6030236 |
T |
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| Q |
104 |
tt-aaaaaacagacatgtttgcatgcaaagatcttattattataggaaa |
151 |
Q |
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| T |
6030237 |
ttaaaaaaacagacatgtttgcatgcaaagatcttattattataggaaa |
6030285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 6029948 - 6030000
Alignment:
| Q |
150 |
aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgta |
202 |
Q |
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| T |
6029948 |
aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta |
6030000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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