View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_23 (Length: 368)
Name: NF11519_low_23
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 174 - 357
Target Start/End: Original strand, 7639305 - 7639488
Alignment:
| Q |
174 |
aatattctcttgagatttggtcaaaattgtttttgtataagatgatttcaattgacaatgttgccttaataatctgtctgttttttcattggatacttct |
273 |
Q |
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| T |
7639305 |
aatattctcttgagatttggtcaaaattgtttttgtataggatgatttcaattgacaatgttgccttaataatctgtatgttttttcattggatacttct |
7639404 |
T |
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| Q |
274 |
ttatatcacaataatcaaactatttatgtttgttgtactagtgtcttaagttttcagaggatactattcatcttcttccttcat |
357 |
Q |
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| T |
7639405 |
ttatatcacaataatcaaactatttatgtttgttgtactagtgtcttaagttttcagaggatactattcagcttcttccttcat |
7639488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 7639148 - 7639248
Alignment:
| Q |
17 |
acatcttgggtgttttaatccaaaagaaacacaagtttcaggtcaacgtgcaattgagctattgagtggacttagtagtgtaaaatctctcaaattatca |
116 |
Q |
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| T |
7639148 |
acatcttgggtgttttaatccaaaagaaacacaagtttcaggtcaacgtgcaattgagctattgagtggacttagtagtgtaaaatctctcaaattatca |
7639247 |
T |
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| Q |
117 |
g |
117 |
Q |
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| T |
7639248 |
g |
7639248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 14728671 - 14728628
Alignment:
| Q |
65 |
tgcaattgagctattgagtggacttagtagtgtaaaatctctca |
108 |
Q |
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| T |
14728671 |
tgcaattgagctattgagtcgacttggtagtgtcaaatctctca |
14728628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 7632491 - 7632544
Alignment:
| Q |
64 |
gtgcaattgagctattgagtggacttagtagtgtaaaatctctcaaattatcag |
117 |
Q |
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| T |
7632491 |
gtgcaattgagctattgagtggattaagtagcgtaaagtctctcagcttatcag |
7632544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 7632702 - 7632792
Alignment:
| Q |
270 |
ttctttatatcacaataatcaaactatttatg---tttgttgtactagtgtcttaagttttcagaggatactattcatcttcttccttcat |
357 |
Q |
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| T |
7632702 |
ttctttatatcataatgatcaaactatttatgctttttgtactactagtatcttgagtattcaaaggagactctccatcatcttccttcat |
7632792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 17594816 - 17594859
Alignment:
| Q |
65 |
tgcaattgagctattgagtggacttagtagtgtaaaatctctca |
108 |
Q |
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| T |
17594816 |
tgcaattgagctattgagtcgacttggtagtgtcaaatctctca |
17594859 |
T |
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