View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_24 (Length: 366)
Name: NF11519_low_24
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 358
Target Start/End: Complemental strand, 39308160 - 39307804
Alignment:
| Q |
2 |
atactaagctcttgaccaatgcttccttcaggatcaatcaaatgaaaagattcacaattagatttagaagaaccacgaaccctttgaaagttagctctaa |
101 |
Q |
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| T |
39308160 |
atactaagctcttgaccaatgcttccttcaggatcaatcaaatgaaaagattcacaattagatttagaagaaccacgaaccctttgaaagttagctctaa |
39308061 |
T |
|
| Q |
102 |
gatacataagttgatcatcttcttgacaaatctcttttccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcgct |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39308060 |
gatacataagttgatcatcttcttgacaaatctcttttccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcact |
39307961 |
T |
|
| Q |
202 |
tcttgaaggcttacgcttaaccgaatacccgactttcctcccattacagtacataatccatagaggagttgaaaacaagttactgttattgttacaagat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39307960 |
tcttgaaggcttacgcttaaccgaatacccgactttcctcccattacagtacataatccaaagaggagttgaaaacaagttactgttattgttacaagat |
39307861 |
T |
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| Q |
302 |
cctgaggtagcactttctagcacaattctcaacgttcctcctctcatttcctttgct |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39307860 |
cctgaggtagcactttctagcacaattctcaacgttcctcctctcatttcctttgct |
39307804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 37495167 - 37495139
Alignment:
| Q |
29 |
tcaggatcaatcaaatgaaaagattcaca |
57 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
37495167 |
tcaggatcaatcaaatgaaaagattcaca |
37495139 |
T |
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