View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11519_low_25 (Length: 362)

Name: NF11519_low_25
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11519_low_25
NF11519_low_25
[»] chr7 (2 HSPs)
chr7 (31-343)||(29926671-29926983)
chr7 (72-352)||(28257416-28257694)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 31 - 343
Target Start/End: Original strand, 29926671 - 29926983
Alignment:
Q  31 ctacactaaacaattccaacaaaaataaatatattaattgtttttgtcaacaaaagaattaaaccgattgtttaatttgatgcaaacttttaagtatata 130  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29926671 ctacactaaacaattccaacaaaaataaatatattaattgcttttgtcaaaaaaagaattaaaccgattgtttaatttgatgcaaacttttaagtatata 29926770  T
Q  131 taaattgatgattaagttaattagatgcatcaatatttcagttgtgtgatttctcatacattttatacattcttcttagtatcacaaatttcatatatct 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  29926771 taaattgatgattaagttaattagatgcatcaatatttcagttgtgtgatttctcatacattttatacattcttcttagtatcacaaatctcatatattt 29926870  T
Q  231 tttgttgttgataatttatatcttccaaaaatatgaatcaaataataagttgttggggtgcaataataaccatagtgtggatgagtgtgacagtgacatt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29926871 tttgttgttgataatttatatcttccaaaaatatgaatcaaataataagttgttggggtgcactaataaccatagtgtggatgagtgtgacagtgacatt 29926970  T
Q  331 atcaaagggtgtt 343  Q
    |||||||||||||    
T  29926971 atcaaagggtgtt 29926983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 72 - 352
Target Start/End: Original strand, 28257416 - 28257694
Alignment:
Q  72 ttttgtcaacaaaagaattaaaccgattgtttaatttgatgcaaacttttaagtatatataaattgatgattaagttaattagatgcatcaatatttcag 171  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    |||||||||| ||||||||| |   ||||    
T  28257416 ttttgtcaa-aaaagaattaaaccgattgtttaatttgatgcaaacttttaagtatatataagttgac---taagttaattggatgcatcact---tcag 28257508  T
Q  172 ttgtg-----tgatttctcatacattttatacattcttcttagtatcacaaatttcatatatcttttgttgttgataatttatatcttccaaaaatatga 266  Q
    |||||     |||||||||||||| ||| ||| ||||||||| |||||||||| |||||  | |||||||||||||||||||||||||||||| ||||||    
T  28257509 ttgtgaattgtgatttctcatacaatttgtacgttcttcttaatatcacaaatctcataacttttttgttgttgataatttatatcttccaaatatatga 28257608  T
Q  267 atcaaataataagttgttggggtgcaataataaccatagtgtggatgagtgtgacagtgacattatcaaagggtgttcgtcctatg 352  Q
    ||||||||| ||||| ||||| | || | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  28257609 atcaaataacaagttattgggctacactcataaccatagtgtggatgagtgtgacagtgacattatcaaagggtattcgacctatg 28257694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University