View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_30 (Length: 317)
Name: NF11519_low_30
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_30 |
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| [»] scaffold0838 (1 HSPs) |
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| [»] scaffold0832 (1 HSPs) |
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Alignment Details
Target: scaffold0838 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0838
Description:
Target: scaffold0838; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 4294 - 4586
Alignment:
| Q |
10 |
aaacattgaattatcaataaaatattagaacatagtttgaaataattttccttactaaaatcaattcatgttgttaaagcttttaaaacattgcaatcgt |
109 |
Q |
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| T |
4294 |
aaacattgaattatcaataaaatattagaacatagtttgaaataattttccttactaaaatcaattcatgttgttaaagcttttaaaacattgcaatcgt |
4393 |
T |
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| Q |
110 |
aattaaatccattcatagtatcacatgaaacttgcaaataaaagtactaatccttactactttgcttaaccattaaaatttcgcccttattatttaaaag |
209 |
Q |
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| T |
4394 |
aattaaatccattcatagtatcacatgaaacttgcaaataaaagtactaatccttactactttgcttaaccattaaaatttcgcccttattatttaaaag |
4493 |
T |
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| Q |
210 |
ccagtaacacaatttgaatgaaatgagattctcttttctaaacaaaatttaatttgtttctcccataaataaaattataacttagaaaattgt |
302 |
Q |
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| T |
4494 |
ccagtaacacaatttgaatgaaatgagattctcttttctaaacaaaatataatttgtttctcccataaataaaattataacttagaaaattgt |
4586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0832 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0832
Description:
Target: scaffold0832; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 4325 - 4617
Alignment:
| Q |
10 |
aaacattgaattatcaataaaatattagaacatagtttgaaataattttccttactaaaatcaattcatgttgttaaagcttttaaaacattgcaatcgt |
109 |
Q |
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| T |
4325 |
aaacattgaattatcaataaaatattagaacatagtttgaaataattttccttactaaaatcaattcatgttgttaaagcttttaaaacattgcaatcgt |
4424 |
T |
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| Q |
110 |
aattaaatccattcatagtatcacatgaaacttgcaaataaaagtactaatccttactactttgcttaaccattaaaatttcgcccttattatttaaaag |
209 |
Q |
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| T |
4425 |
aattaaatccattcatagtatcacatgaaacttgcaaataaaagtactaatccttactactttgcttaaccattaaaatttcgcccttattatttaaaag |
4524 |
T |
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| Q |
210 |
ccagtaacacaatttgaatgaaatgagattctcttttctaaacaaaatttaatttgtttctcccataaataaaattataacttagaaaattgt |
302 |
Q |
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| T |
4525 |
ccagtaacacaatttgaatgaaatgagattctcttttctaaacaaaatataatttgtttctcccataaataaaattataacttagaaaattgt |
4617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 35860233 - 35860512
Alignment:
| Q |
13 |
cattgaattatcaataaaatattagaacatagtttgaaataattttccttactaaaatcaattcatgttgttaaagcttttaaaacattgcaatcgtaat |
112 |
Q |
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|||| |||| ||||||||| |||| |||||||||| ||||||||||| ||||||||| |||||||| |||| |||||||||| | ||||| | ||||| |
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| T |
35860233 |
catttaattctcaataaaacattaaaacatagtttaaaataattttctttactaaaaccaattcatattgtcaaagcttttatagcattgttactgtaat |
35860332 |
T |
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| Q |
113 |
taaatccattcatagtatcacatgaaacttgcaaataaaagtactaatccttactactttgcttaaccattaaaatttcgcccttattatttaaaagcca |
212 |
Q |
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| T |
35860333 |
taaattcatatatagtatcacaggaaacttgcaaa---aactgataacccttattactttgctttgccattaaaatctcgtctttattatttaaaagcaa |
35860429 |
T |
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| Q |
213 |
gtaacacaatttgaatgaaatgagattctcttttctaaacaaaatttaatttgtttctcccataaataaaattataacttaga |
295 |
Q |
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| T |
35860430 |
ataccacagtttgaatgaaataagattctcttttctaaacaaaaaataatttgtttctcccataaataaaatcataacttaga |
35860512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 26082160 - 26082289
Alignment:
| Q |
18 |
aattatcaataaaatattagaacatagtttgaaataattttccttactaaaatcaattcatgttgttaaagcttttaaaacattgcaatcgtaattaaat |
117 |
Q |
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|||| ||| ||||| |||| ||||| |||||| ||||| ||||||||| |||||||| ||| |||||||||| | ||||| ||| ||| ||||| |
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| T |
26082160 |
aattctcattaaaacattaaaacatgatttgaactaattagccttactaagcccaattcatactgtcaaagcttttatagcattgttatcataaataaat |
26082259 |
T |
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| Q |
118 |
ccattcatagtatcacatgaaacttgcaaa |
147 |
Q |
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| T |
26082260 |
ccattcatcgtatcatatgaagcttgcaaa |
26082289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 254
Target Start/End: Complemental strand, 19479954 - 19479824
Alignment:
| Q |
120 |
attcatagtatcacatgaaacttgcaaataaaagtactaatccttactactttgcttaaccattaaaatttcgcccttattatttaaaagccagtaacac |
219 |
Q |
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|||||| |||||| |||||| ||||||| || ||||||| ||| ||||||||| ||||||||||| | ||| ||||||||||||||| | ||||| |
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| T |
19479954 |
attcattgtatcagatgaaatttgcaaa---aactactaattcttcctactttgcataaccattaaa-tctcgtttttattatttaaaagcaaataacaa |
19479859 |
T |
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| Q |
220 |
aatttgaatgaaatgagattctcttttctaaacaa |
254 |
Q |
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|||||| ||||||| | ||| |||||||||||||| |
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| T |
19479858 |
aatttggatgaaataaaattatcttttctaaacaa |
19479824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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