View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11519_low_31 (Length: 302)

Name: NF11519_low_31
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11519_low_31
NF11519_low_31
[»] chr8 (1 HSPs)
chr8 (1-135)||(31007631-31007765)
[»] scaffold0047 (1 HSPs)
scaffold0047 (135-283)||(72730-72877)
[»] chr1 (3 HSPs)
chr1 (170-283)||(8631769-8631882)
chr1 (51-132)||(17743699-17743780)
chr1 (49-132)||(5716254-5716337)
[»] chr3 (1 HSPs)
chr3 (172-246)||(46673457-46673531)
[»] chr5 (3 HSPs)
chr5 (233-283)||(37609235-37609285)
chr5 (227-274)||(22861356-22861403)
chr5 (135-182)||(37609284-37609331)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31007765 - 31007631
Alignment:
Q  1 gttggaacgtaaatgtggcccaagttaaattagttaccgggtcaatctggaccacatatggcgtatctctggcccaagattattataccggtccacgacc 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  31007765 gttggaacgtaaaggtggcccaagttaaattagttaccgagtcaatttggatcacatatggcatatctttggcccaagattattataccggtccacgacc 31007666  T
Q  101 taataataatttatttaaaaattctttcaaaagaa 135  Q
    |||||||||||||| ||||||||| ||||||||||    
T  31007665 taataataatttatataaaaattccttcaaaagaa 31007631  T

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Target: scaffold0047 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 72877 - 72730
Alignment:
Q  135 actagacttttcacctgtactatcgcacgggtctgatatagatgaagattatttttgaacaaattatttttaaattgttagttgcaactaacatgtatga 234  Q
    ||||||||||||||| || ||||||||||| | |||||||||||||||||| |||| ||||||| || ||||||||||||||||| ||||||||||||||    
T  72877 actagacttttcacccgtgctatcgcacggatatgatatagatgaagattagttttaaacaaatgatctttaaattgttagttgctactaacatgtatga 72778  T
Q  235 catttatattatatttgcaataagacaatcgaatataatggcatgaaac 283  Q
    ||||||  |||||||  |||||||| |||||||||||||| ||||||||    
T  72777 catttaccttatattcacaataaga-aatcgaatataatgacatgaaac 72730  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 170 - 283
Target Start/End: Original strand, 8631769 - 8631882
Alignment:
Q  170 atatagatgaagattatttttgaacaaattatttttaaattgttagttgcaactaacatgtatgacatttatattatatttgcaataagacaatcgaata 269  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||| |||||||||||||| ||||    
T  8631769 atatagatgaagactgtttttgaacaaattatttttaaattgctagttacgactaacatgtatgatatttatattatattcgcaataagacaatcaaata 8631868  T
Q  270 taatggcatgaaac 283  Q
    |||||| |||||||    
T  8631869 taatggaatgaaac 8631882  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 17743699 - 17743780
Alignment:
Q  51 accacatatggcgtatctctggcccaagattattataccggtccacgacctaataataatttatttaaaaattctttcaaaa 132  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  17743699 accacatatgacgtacctctggcccaatattattataccggtccacgacgtaatagtagattatttaaaaattctttcaaaa 17743780  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 5716337 - 5716254
Alignment:
Q  49 ggaccacatatggcgtatctctggcccaagattattataccggtccacgacctaataataatttatttaaaaattctttcaaaa 132  Q
    ||||||||||||  ||| ||||| ||||| |||||||||||||||||| || ||||| ||| ||||||||||||||||| ||||    
T  5716337 ggaccacatatgatgtacctctgacccaatattattataccggtccacaacgtaatagtaaattatttaaaaattcttttaaaa 5716254  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 46673457 - 46673531
Alignment:
Q  172 atagatgaagattatttttgaacaaattatttttaaattgttagttgcaactaacatgtatgacatttatattat 246  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||  ||||||||||| ||||||||||||||    
T  46673457 atagatgaagattgtttttggacaaattatttttaaattgctagttgtgactaacatgtaagacatttatattat 46673531  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 37609285 - 37609235
Alignment:
Q  233 gacatttatattatatttgcaataagacaatcgaatataatggcatgaaac 283  Q
    ||||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  37609285 gacatttatattatattcgcaataagacaatcaaatataatggaatgaaac 37609235  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 22861403 - 22861356
Alignment:
Q  227 atgtatgacatttatattatatttgcaataagacaatcgaatataatg 274  Q
    |||||||  |||||||||| |||||||||||||||||| |||||||||    
T  22861403 atgtatgctatttatattacatttgcaataagacaatcaaatataatg 22861356  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 37609331 - 37609284
Alignment:
Q  135 actagacttttcacctgtactatcgcacgggtctgatatagatgaaga 182  Q
    ||||||||||||||| || ||||||||||||| ||||||||| |||||    
T  37609331 actagacttttcacccgtgctatcgcacgggtgtgatatagaagaaga 37609284  T

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