View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_32 (Length: 280)
Name: NF11519_low_32
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 4499888 - 4499624
Alignment:
| Q |
1 |
taaaccgtgatcgaataaaccaagctcgtgatgctatttgttggccgatatgatgaatacaaccataatagacgcgtaacatcacacaatcacagaaaaa |
100 |
Q |
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| T |
4499888 |
taaaccgtgaccgaataaaccaagctcgtgatgctatttgttggccgatatgatgaatacaaccataatagacgcgtaacatcacacaatcacagaaaaa |
4499789 |
T |
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| Q |
101 |
ccagacccctttaattttataataaacattaacctcccctaaggtcttttaaaatatatattatatcccttttcatttaacaccgttagtactctgttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4499788 |
ccagacccctttaattttataataaacattaacctcccctaaggtcttttaaaatatatattatatcccttttcatttaacaccgttagtactctgttag |
4499689 |
T |
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| Q |
201 |
aaattaaaaatgtagtgtcttcttgatgatgtcaatcttactctatcaaacgattgaatgtttct |
265 |
Q |
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| T |
4499688 |
aaattaaaaatgtagtgtcttcttgatgatgtcaatcttactctatcaaacgattgaatgtttct |
4499624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 13233425 - 13233511
Alignment:
| Q |
179 |
aacaccgttagtactctgttggaaattaaaaatgtagtgtcttcttgatgatgtcaatcttactctatcaaacgattgaatgtttctg |
266 |
Q |
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| T |
13233425 |
aacactgttagtactctgttagaaattaaaaa-gtattgtcttgttgatcatggcaatctttctctaccaaacgattgagtatttctg |
13233511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 41805206 - 41805249
Alignment:
| Q |
115 |
ttttataataaacattaacctcccctaaggtcttttaaaatata |
158 |
Q |
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| T |
41805206 |
ttttataatagacataaacctcccctaagatcttttaaaatata |
41805249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 39673766 - 39673807
Alignment:
| Q |
115 |
ttttataataaacattaacctcccctaaggtcttttaaaata |
156 |
Q |
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| T |
39673766 |
ttttataatagatattaacctcccctaagttcttttaaaata |
39673807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 39673843 - 39673884
Alignment:
| Q |
112 |
taattttataataaacattaacctcccctaaggtcttttaaa |
153 |
Q |
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||||||||||||| | |||||||||||||||| ||||||||| |
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| T |
39673843 |
taattttataatagatattaacctcccctaagttcttttaaa |
39673884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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