View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_34 (Length: 269)
Name: NF11519_low_34
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 8278576 - 8278360
Alignment:
| Q |
18 |
aatattatctcttgtctattgagttttcagaagttcatccattccatagttgctctaagtcaagcatcttgttaaaataggcaatacctaacaattgtta |
117 |
Q |
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| T |
8278576 |
aatattatctcttgtctatagagttttcagaagttcatccattccaaagttgctttaagtcaagcatcttattaaaataggtaataccaaacaattgtta |
8278477 |
T |
|
| Q |
118 |
caagtcttcctttaacctgtagtctcgtacttgtatggcctcaagaaccctcttattgcaatgtaaatttggttttcctagaagctttcgagagccgttc |
217 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
8278476 |
caagtcttcctttaacctgcagtctcgtgcttgtatggcctcaagaaccctcttattgcgatgtaaatttggttttcctagaagctttcgagagctgttc |
8278377 |
T |
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| Q |
218 |
attgacatgccttgtgt |
234 |
Q |
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| T |
8278376 |
attgacatgtcttgtgt |
8278360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 7548196 - 7548095
Alignment:
| Q |
81 |
gcatcttgttaaaataggcaatacctaacaattgttacaagtcttcctttaa-cctgtagtctcgtacttgtatggcctcaagaaccctcttattgcaat |
179 |
Q |
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| T |
7548196 |
gcatcttgttgatatagttaataccaaacaatttttataagtcttcctttaatcatgtagtctcatacctacacggcctcatgatccctctcattgcaat |
7548097 |
T |
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| Q |
180 |
gt |
181 |
Q |
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|| |
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| T |
7548096 |
gt |
7548095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 44471360 - 44471443
Alignment:
| Q |
81 |
gcatcttgttaaaataggcaatacctaacaattgttacaagtcttcctttaacc-tgtagtctcgtacttgtatggcctcaaga |
163 |
Q |
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|||||||||| | ||||| | |||| ||||||| ||| ||||||||||| |||| ||||||||| ||| |||| |||||||||| |
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| T |
44471360 |
gcatcttgttgatataggtagtaccaaacaattcttataagtcttccttcaaccatgtagtctcatacctgtacggcctcaaga |
44471443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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