View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_low_4 (Length: 538)
Name: NF11519_low_4
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 32802804 - 32803317
Alignment:
| Q |
17 |
tcattattatcattatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802804 |
tcattattatcattatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagag |
32802903 |
T |
|
| Q |
117 |
ttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacctggtggagcaggaccaggtagaaatgtccc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802904 |
ttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccagttgaacctggtggagcaggaccaggtagaaatgtccc |
32803003 |
T |
|
| Q |
217 |
ggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803004 |
ggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactg |
32803103 |
T |
|
| Q |
317 |
agaacacaaacaccgcgttgacgccttcttgcgaattgtgctacactttctgctatatcagctccaccagctacctccatgacatggctcttcaaagcat |
416 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32803104 |
agaacacaaacaccgcgttgacgcctccttgcgaattgtgctacactttctgctatatcagctccaccggctacctccatgacatggctcttcaaagcat |
32803203 |
T |
|
| Q |
417 |
ttgggctatctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803204 |
ttgggctatctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttc |
32803303 |
T |
|
| Q |
517 |
tctaggttcatctc |
530 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32803304 |
tctaggttcatctc |
32803317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 32 - 528
Target Start/End: Complemental strand, 16579076 - 16578580
Alignment:
| Q |
32 |
tcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaacaacacaac |
131 |
Q |
| |
|
||||| || |||||||| | ||| ||||| |||||||||| ||||||||| ||||||| ||||||||||||| | |||| | || ||||||||||| | |
|
|
| T |
16579076 |
tcatcttcttcaagtggcaatctttcataggtagcattagcaaaagtagcagcaataaccataacaggtccagcagcaatcaaaggtccaacaacacttc |
16578977 |
T |
|
| Q |
132 |
ctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacctggtggagcaggaccaggtagaaatgtcccggttaaggacaaaat |
231 |
Q |
| |
|
| |||||||| || || || || || || | ||||||||| || ||||||| ||||| |||||||| || |||||||| | |||||||| || | ||| |
|
|
| T |
16578976 |
caccaacaacttgcccttgtccaccggctaagtacactgtgagtccggttgcgcctggaggagcaggtcctggtagaaaagctccggttaatgatagaat |
16578877 |
T |
|
| Q |
232 |
ctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactgagaacacaaacaccg |
331 |
Q |
| |
|
|||||||| ||||||||||||||||| || || || |||| |||||||||||| |||||||| || || || ||||| || || ||||||||||| ||| |
|
|
| T |
16578876 |
atcaaaccttccatgaagtgctacaacagctcctggtgctgcaggttgtctaagggtaacatttgcaactgatccactaccgcttagaacacaaaccccg |
16578777 |
T |
|
| Q |
332 |
cgttgacgccttcttgcgaattgtgctacactttctgctatatcagctccaccagctacctccatgacatggctcttcaaagcatttgggctatctcttg |
431 |
Q |
| |
|
||||| ||||||||||| || || ||||||||||| |||| ||| ||||| | ||| ||||| |||||||| |||| | |||||| || ||||||| |
|
|
| T |
16578776 |
cgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatttggactgtctcttg |
16578677 |
T |
|
| Q |
432 |
ttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttctctaggttcatc |
528 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||| || || |||||||||||||||||||||||||| |||| ||| |||||||||||| | |||||||| |
|
|
| T |
16578676 |
ttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgcaccttcttttggttcatc |
16578580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 32809366 - 32809702
Alignment:
| Q |
17 |
tcattattatcattatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagag |
116 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||| | |||| ||| ||||||||| |
|
|
| T |
32809366 |
tcattattatcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcaataagcataaaaagtcctactacaacaagag |
32809465 |
T |
|
| Q |
117 |
ttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacctggtggagcaggaccaggtagaaatgtccc |
216 |
Q |
| |
|
||||||||||| ||||| ||| || || || ||||||||| ||||||||||| |||| || | || |||| |||| ||||||| ||| |
|
|
| T |
32809466 |
ttccaacaacaaaacctttaactacgtgaccttgacctccatccaggtacactataaggccaatcga---------agcatgaccgagtagaaacttcct |
32809556 |
T |
|
| Q |
217 |
ggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagc-----tacagagccacttc |
311 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32809557 |
agttaaggacaaaatctcaatcctg---tgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctgctatacagagccacttc |
32809653 |
T |
|
| Q |
312 |
cactgagaacacaaa-caccgcgttgacgccttcttgcgaattgtgcta |
359 |
Q |
| |
|
|||| | || | ||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
32809654 |
cactaaaaaaaaaaagcaccacattgacgccttcttgcgaattgtgcta |
32809702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 456 - 530
Target Start/End: Original strand, 32809703 - 32809777
Alignment:
| Q |
456 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttctctaggttcatctc |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttcagttgcatcttctctaggttcatctc |
32809777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 491
Target Start/End: Original strand, 3332386 - 3332434
Alignment:
| Q |
443 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
491 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3332386 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 30679022 - 30679129
Alignment:
| Q |
52 |
tctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaacaacacaacctccaacaacctggccctga |
151 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || |||| ||||||||||||| ||||| | || || ||||| |||| ||||||||||| |||||| |
|
|
| T |
30679022 |
tctctcataggtagcattagcaaaagtagcagctataaccataacaggtccagaagcaaccaaaggacctgcaacagaaccaccaacaacctgcccctga |
30679121 |
T |
|
| Q |
152 |
cctccagc |
159 |
Q |
| |
|
|| ||||| |
|
|
| T |
30679122 |
ccaccagc |
30679129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 13212840 - 13212892
Alignment:
| Q |
439 |
gataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
491 |
Q |
| |
|
|||||||||||||||| ||||||| || || | |||||||||||||||||||| |
|
|
| T |
13212840 |
gataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
13212892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University