View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_41 (Length: 250)
Name: NF11519_low_41
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49043480 - 49043240
Alignment:
| Q |
1 |
taattggatctattctaaatcatgttactaaagatcaacgcactttgatgagctgcttgtaattgttataaattgtaatttatttgatgagtttatgcat |
100 |
Q |
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| T |
49043480 |
taattggatctattctaaatcatgttactaaagatcaacgcactttgatgagctgcttgtaattgttataaattgtaatttatttgatgagtttatgcat |
49043381 |
T |
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| Q |
101 |
gttactaaagaccaaaattacaaatacacactttgattcaaagcacttcattagaagattgatcacaaccacatatatatttgaaggaaataaaaggttt |
200 |
Q |
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| T |
49043380 |
gttactaaagatcaaaattacaaatacacactttgattcaaagcacttcattagaagattgatcacaaccacatatatatttgaaggaaataaaaggttt |
49043281 |
T |
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| Q |
201 |
tgttttctttttagtggatgctaataactttggacctttgc |
241 |
Q |
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| T |
49043280 |
tgttttctttttagtggatgctaataactttggacctttgc |
49043240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 49047766 - 49047616
Alignment:
| Q |
53 |
ctgcttgtaattgttataaattgtaatttatttgatgagtttatgcatgttactaaagaccaaaattacaaatacac-actttgattcaaagcacttcat |
151 |
Q |
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| T |
49047766 |
ctgcttgaaattgttttacattgtaatttattttatatgtttatgtgtgctactaaagatcaaaattacaaac-cacgactccgattcaaagcacgtcat |
49047668 |
T |
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| Q |
152 |
tagaagattgatcacaaccacatatatatttgaaggaaataaaaggttttgtt |
204 |
Q |
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| T |
49047667 |
tagaagtttgatcatggccacatatat-ttgaaaggaaataaaaggttttgtt |
49047616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 48734537 - 48734458
Alignment:
| Q |
75 |
gtaatttatttgatgagtttatgcatgttactaaagaccaaaattacaaatacac-actttgattcaaagcacttcatta |
153 |
Q |
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| T |
48734537 |
gtaatttatttgatgaatttatgcatgttgatcaagatcaaaatcaccattacactactcttattcaaagcacttcatta |
48734458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 48160530 - 48160488
Alignment:
| Q |
61 |
aattgttataaattgtaatttatttgatgagtttatgcatgtt |
103 |
Q |
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| T |
48160530 |
aattgttttatattgtaattaatttgatgagtttatgcatgtt |
48160488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 21017307 - 21017465
Alignment:
| Q |
72 |
attgtaatttatttgatgagtttatgcatgttactaaagaccaaaattacaaatacac-actttgattcaaagcacttcattagaaga-ttgatcacaac |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| | |||||| |||||||||||| | ||| ||| | |
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| T |
21017307 |
attgtaatttatttgatgagtttatgcatgttactaaagatcaaaatcacaaatacacgactctagttcaaattacttcattagaaaatttgttcatggc |
21017406 |
T |
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| Q |
170 |
cacatatatatttgaaggaaataaaaggttttgttttct--ttttagtggatgctaataac |
228 |
Q |
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| T |
21017407 |
cac--atatattttaaggaaataaatggttttgctctctaattttagtagacgctaataac |
21017465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 14197281 - 14197239
Alignment:
| Q |
61 |
aattgttataaattgtaatttatttgatgagtttatgcatgtt |
103 |
Q |
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| T |
14197281 |
aattgttttatattgtaattaatttgatgagtttatgcatgtt |
14197239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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