View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_44 (Length: 248)
Name: NF11519_low_44
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 4499984 - 4500210
Alignment:
| Q |
3 |
gttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaaatagacatttgtggtgtcatgcaaaacgagcctaaggcctattgaacag |
102 |
Q |
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| T |
4499984 |
gttgacatggatgtttgagttgttgtcgtcaacgggtggtttgaaccgcaaatagacgtttgtggtgtcatgcaaaacgagcctaaggccgattgaacag |
4500083 |
T |
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| Q |
103 |
ccgatgataaaaataattccgatacaatttgaaagcgaggaacacactcatattggccttaggcatatatgagtgtcactcgctttcatattgtaaaatg |
202 |
Q |
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| T |
4500084 |
ccgatgataaaaataattccgatacaatttgaaagcaaggaacacactcatattggccttagacgtatatgagtgtcactcgctttcatattgtaaaatg |
4500183 |
T |
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| Q |
203 |
gctaaagcaatgtgggactcttgagaa |
229 |
Q |
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| T |
4500184 |
actaaagcaatgtgggacacttgagaa |
4500210 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 17689316 - 17689442
Alignment:
| Q |
28 |
tcgtcaacgggtggtttgaaccgcaaatagacatttgtggtgtcatgcaaaacgagcctaaggcctattgaacagccgatgataa-aaataattccgata |
126 |
Q |
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| T |
17689316 |
tcgtcaacggatggtttgaaccgcaaatatatgttggcggtgtcatgcaaaacaagcctaagatcgattggacaactgatgataagaagaaagtctaata |
17689415 |
T |
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| Q |
127 |
caatttgaaagcgaggaacacactcat |
153 |
Q |
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| T |
17689416 |
cgatttgaaagcgatgaacatactcat |
17689442 |
T |
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