View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_low_45 (Length: 245)
Name: NF11519_low_45
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_45 |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 4853235 - 4853137
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4853235 |
gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
4853137 |
T |
|
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 2894012 - 2894110
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
2894012 |
gctattttggaaaatggactatggagttttggagctagtaaaagctgcaaattgtggataagttgcttgtaatttcgggactaatgccaaggtgagttc |
2894110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 6734923 - 6734990
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgctt |
214 |
Q |
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|||||||||||||| |||||||||| ||||||| ||| | || |||||||||| ||||||||||||| |
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| T |
6734923 |
gctattttggaaaaatgattatggagttttggagatagaagaagctgcaaattggggataagctgctt |
6734990 |
T |
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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 14114212 - 14114310
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14114212 |
gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
14114310 |
T |
|
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 15089076 - 15089004
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaat |
219 |
Q |
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|||||||||||||| |||||||||| ||| ||| ||| | || |||||||||||||||||| ||||| |||| |
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| T |
15089076 |
gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat |
15089004 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 22211684 - 22211612
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaat |
219 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||| ||| | || |||||||||||||||||| ||||| |||| |
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| T |
22211684 |
gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat |
22211612 |
T |
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Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 14023421 - 14023324
Alignment:
| Q |
19 |
ggctcatgttgcaacattagtacatcggaagaaaatacaaggtcgaaatgtgatttctccgatcaaatttggacgaacaaagttgtttgactatgata |
116 |
Q |
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|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14023421 |
ggctcatgtttcaacattagtacatcggacgaaaatacaaggtcgaaatgtgatttctccgatcaaatttggacgaacaaagttgtttgactatgata |
14023324 |
T |
|
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Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 33295596 - 33295694
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33295596 |
gctattttggaaaatggattatggagttttggagctagtaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
33295694 |
T |
|
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Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 28223306 - 28223209
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagtt |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28223306 |
gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggagagtt |
28223209 |
T |
|
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Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 29934012 - 29934110
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29934012 |
gctattttggaaaatggattatggatttttggagctagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttc |
29934110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 5249438 - 5249526
Alignment:
| Q |
157 |
aaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
||||||||||||| || ||||||| || ||||| ||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
5249438 |
aaaatggattatgaagttttggagttaacaaaagctgaaaattatggataagctgcctgcaatctcgggactaatgccaaggtgagttc |
5249526 |
T |
|
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Target: scaffold0038 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 23804 - 23707
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagtt |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23804 |
gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggagagtt |
23707 |
T |
|
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Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 42785364 - 42785463
Alignment:
| Q |
146 |
tgctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42785364 |
tgctattttggaaaatggactatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttc |
42785463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 4341941 - 4341843
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
4341941 |
gctattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaatttcgggactaatgccaaggtgagttc |
4341843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 3078223 - 3078295
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaat |
219 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||| ||| | || |||||||||||||||||||||||| |||| |
|
|
| T |
3078223 |
gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagctgctttcaat |
3078295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 3081733 - 3081669
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctg |
211 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||| ||| | || ||||||||||||||||||||| |
|
|
| T |
3081733 |
gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagctg |
3081669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 21957955 - 21958015
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataag |
208 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| |||||||| ||||| ||| |||||||| |
|
|
| T |
21957955 |
gctattttggaaaatgg-ttatgaagttttggagatagcaaaagctgcagattatggataag |
21958015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 2742784 - 2742882
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2742784 |
gctattttggaaaatggattatggatttttggagctagcaaaagctgcaaattgtggataagctgcttgaaatttcgggactaatgccaaggtgagttc |
2742882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 2696454 - 2696544
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaag |
237 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2696454 |
gctattttggaaaatggattatggagttttggagttagcaaaagctgaaaattgtgaataagctgcttgcaatttcgggactaatgccaag |
2696544 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 5558613 - 5558515
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558613 |
gctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
5558515 |
T |
|
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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 41529235 - 41529137
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529235 |
gctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
41529137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 37368338 - 37368435
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37368338 |
gctattttggaaaatggattatggagttttgga-ctagcaaaagctgcaaattttggataagctgcttgcaatttcgggactaattccaaggtgagttc |
37368435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 28035263 - 28035190
Alignment:
| Q |
147 |
gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatt |
220 |
Q |
| |
|
|||||||| ||||| ||||| |||| |||| || |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
28035263 |
gctattttcgaaaagtgattacggagttttgtagaaagcagaagctgcaaattgtggataagctgcttgcaatt |
28035190 |
T |
|
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