View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11519_low_46 (Length: 241)

Name: NF11519_low_46
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11519_low_46
NF11519_low_46
[»] chr4 (9 HSPs)
chr4 (1-225)||(49043490-49043714)
chr4 (72-225)||(49047945-49048101)
chr4 (75-158)||(48871142-48871228)
chr4 (75-158)||(48876446-48876532)
chr4 (75-158)||(48886828-48886914)
chr4 (1-73)||(49047810-49047882)
chr4 (82-161)||(45365620-45365702)
chr4 (118-149)||(48155862-48155893)
chr4 (18-47)||(48853459-48853488)
[»] chr8 (5 HSPs)
chr8 (116-165)||(15349464-15349513)
chr8 (117-160)||(12200913-12200956)
chr8 (117-160)||(12445341-12445384)
chr8 (119-160)||(12195898-12195939)
chr8 (119-160)||(12440326-12440367)
[»] chr6 (1 HSPs)
chr6 (88-222)||(21016339-21016476)
[»] chr5 (1 HSPs)
chr5 (82-160)||(9120343-9120424)
[»] chr3 (1 HSPs)
chr3 (75-159)||(11014890-11014974)
[»] chr7 (1 HSPs)
chr7 (119-149)||(30124742-30124772)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 49043490 - 49043714
Alignment:
Q  1 aaacaatagtgaatcacacaaacatttcatgacatattacatcagctcatctggcatagtgactcatgttacataacctcattcttcttgtttgtgtcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49043490 aaacaatagtgaatcacacaaacatttcatgacatattacatcagctcatctggcatagtgactcatgttacataacctcattcttcttgtttgtgtcat 49043589  T
Q  101 cttaaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccacttgggatgtgcgattctctttataataagaggtatactctag 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49043590 cttaaccttgttcgctatcaccggggagtgaaagcaaagactctgtatagatagccacttgggatgtgcgattctctttatattaagaggtatactctag 49043689  T
Q  201 aaactgtcccttttcatcatacttc 225  Q
    ||||||||| |||||||||||||||    
T  49043690 aaactgtcctttttcatcatacttc 49043714  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 49047945 - 49048101
Alignment:
Q  72 cataacctcattcttcttgtttgtgtcatcttaaccttgttcgctat--caccaggg-agtgaaagcaaagactctgtatagatagccacttgggatgtg 168  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||  |||  ||| ||||||||||||||||||||||| ||||||||  ||||||||    
T  49047945 cataaactcgttcttcttgtttatgtcatcttaaccttgttcgctatatcacggggggagtgaaagcaaagactctgtatacatagccacccgggatgtg 49048044  T
Q  169 cgattctctttataataagaggtatactctagaaactgtcccttttcatcatacttc 225  Q
    | |||||||||||| || ||||||||||||||||||||||| |||||||| ||||||    
T  49048045 caattctctttatagtaggaggtatactctagaaactgtcctttttcatcgtacttc 49048101  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 48871228 - 48871142
Alignment:
Q  75 aacctcattcttcttgtttgtgtca---tcttaaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccac 158  Q
    |||||||||||||||||||||||||   |||||| | || ||  | |||||||||||||||||||||||||||||||||||||||||    
T  48871228 aacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtatagatagccac 48871142  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 48876532 - 48876446
Alignment:
Q  75 aacctcattcttcttgtttgtgtca---tcttaaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccac 158  Q
    |||||||||||||||||||||||||   |||||| | || ||  | |||||||||||||||||||||||||||||||||||||||||    
T  48876532 aacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtatagatagccac 48876446  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 48886914 - 48886828
Alignment:
Q  75 aacctcattcttcttgtttgtgtca---tcttaaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccac 158  Q
    |||||||||||||||||||||||||   |||||| | || ||  | |||||||||||||||||||||||||||||||||||||||||    
T  48886914 aacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtatagatagccac 48886828  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 49047810 - 49047882
Alignment:
Q  1 aaacaatagtgaatcacacaaacatttcatgacatattacatcagctcatctggcatagtgactcatgttaca 73  Q
    |||||||||| ||||||||||||||| ||||| | ||||||||||||||| ||||||| || || ||||||||    
T  49047810 aaacaatagtaaatcacacaaacattccatgagaaattacatcagctcatgtggcataatgtctaatgttaca 49047882  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 45365620 - 45365702
Alignment:
Q  82 ttcttcttgtttgtgtcatctt---aaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccacttg 161  Q
    ||||||||||||||||||||||   || |||| ||  | |||||||| ||||| ||||||||||||||||| || ||||||||    
T  45365620 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtatacatggccacttg 45365702  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 149
Target Start/End: Original strand, 48155862 - 48155893
Alignment:
Q  118 tcaccagggagtgaaagcaaagactctgtata 149  Q
    ||||||||||||||||||||||||||||||||    
T  48155862 tcaccagggagtgaaagcaaagactctgtata 48155893  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 48853488 - 48853459
Alignment:
Q  18 acaaacatttcatgacatattacatcagct 47  Q
    ||||||||||||||||||||||||||||||    
T  48853488 acaaacatttcatgacatattacatcagct 48853459  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 15349513 - 15349464
Alignment:
Q  116 tatcaccagggagtgaaagcaaagactctgtatagatagccacttgggat 165  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  15349513 tatcaccagggagtgaaagcagagactctgtatacatagccacttgggat 15349464  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 12200956 - 12200913
Alignment:
Q  117 atcaccagggagtgaaagcaaagactctgtatagatagccactt 160  Q
    |||||||||||||||||||| |||||||||||| || |||||||    
T  12200956 atcaccagggagtgaaagcagagactctgtatacatcgccactt 12200913  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 12445384 - 12445341
Alignment:
Q  117 atcaccagggagtgaaagcaaagactctgtatagatagccactt 160  Q
    |||||||||||||||||||| |||||||||||| || |||||||    
T  12445384 atcaccagggagtgaaagcagagactctgtatacatcgccactt 12445341  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 12195939 - 12195898
Alignment:
Q  119 caccagggagtgaaagcaaagactctgtatagatagccactt 160  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  12195939 caccagggagtgaaagcagagactctgtatacatggccactt 12195898  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 12440367 - 12440326
Alignment:
Q  119 caccagggagtgaaagcaaagactctgtatagatagccactt 160  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  12440367 caccagggagtgaaagcagagactctgtatacatggccactt 12440326  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 21016476 - 21016339
Alignment:
Q  88 ttgtttgtgtcatctt---aaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccacttgggatgtgcgattctctttataat 184  Q
    ||||||||||||||||   || |||| ||| | ||| |||||||||||||||||||||||||||| | ||||||| | |||   | || |||| || |||    
T  21016476 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagccactcgagatccacaatcctctatacaat 21016377  T
Q  185 aagaggtatactctagaaactgtcccttttcatcatac 222  Q
    | |||| ||||||||  |||||||| ||||||||||||    
T  21016376 aggaggaatactctaacaactgtccattttcatcatac 21016339  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 9120424 - 9120343
Alignment:
Q  82 ttcttcttgtttgtgtcatct---taaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccactt 160  Q
    |||||||||||||||||||||   ||| |||||||  | ||||||||||||||||||| |||||||||||| | ||||||||    
T  9120424 ttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtgaaagcagagactctgtataaagagccactt 9120343  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 11014890 - 11014974
Alignment:
Q  75 aacctcattcttcttgtttgtgtcatcttaaccttgttcgctatcaccagggagtgaaagcaaagactctgtatagatagccact 159  Q
    ||||||||||||||| | |||||||||||||  |||  | || ||||||||||||||||||| ||||||||| || ||| |||||    
T  11014890 aacctcattcttcttctctgtgtcatcttaaaattgcccactgtcaccagggagtgaaagcagagactctgtgtacataaccact 11014974  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 30124742 - 30124772
Alignment:
Q  119 caccagggagtgaaagcaaagactctgtata 149  Q
    |||||||||||||||||||||||||||||||    
T  30124742 caccagggagtgaaagcaaagactctgtata 30124772  T

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