View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_50 (Length: 236)
Name: NF11519_low_50
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 16911372 - 16911150
Alignment:
| Q |
11 |
ctgaccatctctaataagtccaccacttccaaccacgatgtcaaaaattttgattccatggatgatcacattctcgatgaactggatagtaataccagca |
110 |
Q |
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| T |
16911372 |
ctgaccatctctaataagtccaccacttccaaccacgatgtcaaaaattttgattccatggatgatcacattctcgatgaactggatagtaataccagca |
16911273 |
T |
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| Q |
111 |
ccactagcaatggtaacatcagctcctcttccatcaatggtcttgtgacttgtcattatgagctcctggttgagcctaatggtcatgctacgagcgaagg |
210 |
Q |
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| T |
16911272 |
ccactagcaatggtaacatcagctcctcttccatcaatggtcttgtgacttgtcattatgagctcctggttgagcctaatggtcatgctacgagcgaagg |
16911173 |
T |
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| Q |
211 |
tgatccacaaaggcccatttctt |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
16911172 |
tgatccacaaaggcccatttctt |
16911150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 16915771 - 16915555
Alignment:
| Q |
17 |
atctctaataagtccaccacttccaaccacgatgtcaaaaattttgattccatggatgatcacattctcgatgaactggatagtaataccagcaccacta |
116 |
Q |
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| T |
16915771 |
atctctaacaagtccaccacttccaaccataatgtcataaattttgatcccatggatgatcacattctcgatgaactggatagtaataccagcaccatta |
16915672 |
T |
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| Q |
117 |
gcaatggtaacatcagctcctcttccatcaatggtcttgtgacttgtcattatgagctcctggttgagcctaatggtcatgctacgagcgaaggtgatcc |
216 |
Q |
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| T |
16915671 |
gcaatggtaacatcagctcctcgtccatcaatggtcttgttacctgccattatgagctcctggttgagcctaatcttcatgctacgagcgaagatgatcc |
16915572 |
T |
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| Q |
217 |
acaaaggcccatttctt |
233 |
Q |
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| T |
16915571 |
acaaaggcccatttctt |
16915555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 1872577 - 1872657
Alignment:
| Q |
153 |
ttgtgacttgtcattatgagctcctggttgagcctaatggtcatgctacgagcgaaggtgatccacaaaggcccatttctt |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1872577 |
ttgtgacttgtcattatgagctcctggttgagcctaatggtcatgctacgagcgaaggtgatccacaaaggcccatttctt |
1872657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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