View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_52 (Length: 220)
Name: NF11519_low_52
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 38407908 - 38407719
Alignment:
| Q |
18 |
aatggtatctcttcattttcccttaaagaaaggaattaccttctagtttaaaatttatataatatatcaacnnnnnnnactgtttattggtcagattcct |
117 |
Q |
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| T |
38407908 |
aatggtatctcttcattttcccttaaagaaaggaattactttctagtttaaaatttatataatatatcaactttttttactgtttatgggtcagattcct |
38407809 |
T |
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| Q |
118 |
ggcatggcataacttgtaatcaaagctttttagcttttgtaatttaaattatgttcattc-aaaccactttagtattttcagttcctatg |
206 |
Q |
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| T |
38407808 |
ggcatggcataacctgtaatcaaagctttttagcttttgtaatttcaattatgttcattcaaaaccactttagtattttcagttcctatg |
38407719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 38412899 - 38412852
Alignment:
| Q |
135 |
aatcaaagctttttagcttttgtaatttaaat--tatgttcattcaaa |
180 |
Q |
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| T |
38412899 |
aatcaatgctttttagcttttgtaatttcaattatatgttcattcaaa |
38412852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 1091679 - 1091793
Alignment:
| Q |
22 |
gtatctcttcattttcccttaaagaaaggaattaccttctagtttaaaatttatataatatatcaacnnnnnnnactgtttattggtcagattcctggca |
121 |
Q |
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| T |
1091679 |
gtatctcttctgtttcctttaaaggaaggaattactttatagtttaaaatttatgtaatacatcagc-ttttttactgtttagtggtctgattcctggca |
1091777 |
T |
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| Q |
122 |
tggcataacttgtaat |
137 |
Q |
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| T |
1091778 |
tggaataacttgtaat |
1091793 |
T |
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