View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11519_low_6 (Length: 532)
Name: NF11519_low_6
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 42848995 - 42848485
Alignment:
| Q |
1 |
tgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcacaacagcaatggcc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848995 |
tgaattgacaattcctagtaaagaagggaaagaattataagcctaat-aagttatatccatagagaatgcaagaatagaggtttcacaacagcaatggcc |
42848897 |
T |
|
| Q |
101 |
tgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaatagagtaaatgcgttacagtggtgcttgcatctttgtgagcttcagaacggcca |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848896 |
tgaaactcaccaaataggaaagtcaaaaatatgcagaaacagaaaatagagtaaatgtgttacagtggtgcttgcatctttgtgagcttcagaacggcca |
42848797 |
T |
|
| Q |
201 |
agcatagctactagttaaatgactctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42848796 |
agcatagctactagttaaatgactccggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcatcaaacagaataatagtctttgaa |
42848697 |
T |
|
| Q |
301 |
atttacttctagtatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgaga |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848696 |
atttacttctattatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgaga |
42848597 |
T |
|
| Q |
401 |
tcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848596 |
tcaagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgt |
42848497 |
T |
|
| Q |
501 |
tgatgcagttgc |
512 |
Q |
| |
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|||||||||||| |
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|
| T |
42848496 |
tgatgcagttgc |
42848485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 340 - 512
Target Start/End: Complemental strand, 42855201 - 42855030
Alignment:
| Q |
340 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatacc |
439 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
42855201 |
aaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa-aaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
42855103 |
T |
|
| Q |
440 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgc |
512 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| ||||| |
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|
| T |
42855102 |
ctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgc |
42855030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 42855638 - 42855475
Alignment:
| Q |
1 |
tgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcacaacagcaatggcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
42855638 |
tgaattgacaattcctagtaaagaagggaaagagttataagcctaatcaagttatatctttggggaatgcaagaatagaggtttcacaacagcaatggcc |
42855539 |
T |
|
| Q |
101 |
tgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaat-agagtaaatgcgttaca |
164 |
Q |
| |
|
||||| ||||| ||| ||| ||| ||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
42855538 |
tgaaattcacctaatgggagagtgaaaaatatgcagaaacagaaaataagagt-aatgcgttaca |
42855475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 212 - 488
Target Start/End: Complemental strand, 42853435 - 42853163
Alignment:
| Q |
212 |
tagttaaatgactctg--gtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaa------acagaataatagtctttgaaatt |
303 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||||||| | ||||| |||| || ||||| |||||||| |||||||||||||| |
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| T |
42853435 |
tagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaata-tagtctttgaaatt |
42853337 |
T |
|
| Q |
304 |
tacttctagtatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatca |
403 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||| ||||||||||| || ||| ||||||||||||||||||||||| || ||| |||| |
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| T |
42853336 |
tacttctagaatcatacatcttgagtatttaaaa-----------attaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatcc |
42853248 |
T |
|
| Q |
404 |
agaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttca |
488 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| |||||||||| || ||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
42853247 |
agaaaaaaccttagagagagaatcttttaacaggccctcctccaggcattttgaaagatccttgatcctccttttctgcatttca |
42853163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 373 - 512
Target Start/End: Complemental strand, 42860884 - 42860745
Alignment:
| Q |
373 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
472 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||||| |
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| T |
42860884 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcct |
42860785 |
T |
|
| Q |
473 |
ccttctctgcatttcattagttggctgttgatgcagttgc |
512 |
Q |
| |
|
|| | ||||||||||| || |||||||||||||| ||||| |
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|
| T |
42860784 |
ccctttctgcatttcagtaattggctgttgatgccgttgc |
42860745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 42857164 - 42857084
Alignment:
| Q |
68 |
tgcaagaatagaggtttcacaacagcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaata |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||| |
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|
| T |
42857164 |
tgcaagaatagaggtttcacaacagcaatggcctgaaattcaccaaatgggagagtgaaaaatatgcagaaacagaaaata |
42857084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 373 - 512
Target Start/End: Complemental strand, 42856807 - 42856668
Alignment:
| Q |
373 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
472 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||| | |
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|
| T |
42856807 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatctt |
42856708 |
T |
|
| Q |
473 |
ccttctctgcatttcattagttggctgttgatgcagttgc |
512 |
Q |
| |
|
|| | ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
42856707 |
ccctttctgcatttcagtaattggctgttgatgccgttgc |
42856668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 42855247 - 42855191
Alignment:
| Q |
340 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaat |
396 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
42855247 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaagaaaattaaaat |
42855191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42857214 - 42857184
Alignment:
| Q |
1 |
tgaattgacaattcctagtaaagaagggaaa |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42857214 |
tgaattgacaattcctagtaaagaagggaaa |
42857184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 42856986 - 42856910
Alignment:
| Q |
223 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
300 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||| | ||||||||| || ||| |||| ||||| |||||||||| |
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|
| T |
42856986 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42856910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 42861063 - 42860987
Alignment:
| Q |
223 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
300 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||| | ||||||||| || ||| |||| ||||| |||||||||| |
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|
| T |
42861063 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42860987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 506
Target Start/End: Complemental strand, 27350 - 27272
Alignment:
| Q |
428 |
ttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
506 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||||| | || |||||| || ||||||| |||||| |
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|
| T |
27350 |
ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaattggctgctgatgc |
27272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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