View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11519_low_8 (Length: 524)
Name: NF11519_low_8
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11519_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Original strand, 6107920 - 6108415
Alignment:
| Q |
18 |
aattcttgctttcctatttatcttgaaaattcaaaaacaggtattggaatcaacagatcatataaattcttgcaaaccagtgagccgcttagacccttcc |
117 |
Q |
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| T |
6107920 |
aattcttgctttcctatttatcttgaaaattcaaaaacaggtattggaatcaacagatcatataaattcttgcaaaccagtgagccgcttagacccttct |
6108019 |
T |
|
| Q |
118 |
tatacagagacattaaagttcttacagaaattaaaagatgctggttttagttggtgaccgtttactgttgttgtggactgggctgaatgcctcaaatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6108020 |
tatacagagacattaaagttcttacagaaattaaaagatgctggttttagttggtgaccgtttactgttgttgtggactgggctgaatgcctcaaatttt |
6108119 |
T |
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| Q |
218 |
agagaagctgagttgcgcagatatcagggcgacgatgaaacatgctatacctaagtagatata--tatgtaaagacttctgaagagctaggtaggtgtat |
315 |
Q |
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|||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
6108120 |
agagaagccgagttacgcagatatcagggcggcgatgaaacatgctatacttaagtagatatatgtatgtaaagacttctgaagagctaggtaggcgtat |
6108219 |
T |
|
| Q |
316 |
atgtgacaattacatgtcaaatgcatgggaagcttgtggtgttctgtggcatcgacttgacaccatttaacatgtttagtgaaaggcccaaggtggacca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6108220 |
ctgtgacaattacatgtcaaatgcatgggaagcttgtggtgttctgtggcatcgacttgacaccatttaacatgtttagtgaaaggcccaaggtggacca |
6108319 |
T |
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| Q |
416 |
agagtttggcatgcctaacttgcatannnnnnnattcttggatcattctttcggcgcttcaaatttcatcagtgttggagaccagcttgccctttg |
511 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6108320 |
agagtttggcatgcctaacttgcatatttttttattcttggatcattctttcggcgcttcaaatttcatcagtgttggagaccagcttgccctttg |
6108415 |
T |
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