View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11519_low_9 (Length: 461)

Name: NF11519_low_9
Description: NF11519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11519_low_9
NF11519_low_9
[»] chr1 (9 HSPs)
chr1 (51-259)||(33053638-33053846)
chr1 (55-222)||(22580822-22580991)
chr1 (77-225)||(34059510-34059660)
chr1 (332-444)||(33054167-33054279)
chr1 (252-308)||(33053863-33053919)
chr1 (407-446)||(22580526-22580565)
chr1 (410-446)||(34059215-34059251)
chr1 (14-52)||(33053566-33053604)
chr1 (20-53)||(22581026-22581059)
[»] chr4 (7 HSPs)
chr4 (51-250)||(41501539-41501738)
chr4 (55-146)||(19140638-19140729)
chr4 (252-446)||(41501764-41501979)
chr4 (66-128)||(34294869-34294931)
chr4 (407-446)||(19140292-19140331)
chr4 (14-52)||(41501467-41501505)
chr4 (20-53)||(19140764-19140797)
[»] scaffold0049 (5 HSPs)
scaffold0049 (51-250)||(45493-45692)
scaffold0049 (326-446)||(45242-45360)
scaffold0049 (252-308)||(45411-45467)
scaffold0049 (303-335)||(45365-45397)
scaffold0049 (20-52)||(45724-45756)
[»] chr5 (4 HSPs)
chr5 (51-243)||(29635832-29636024)
chr5 (325-446)||(29635555-29635674)
chr5 (252-308)||(29635736-29635792)
chr5 (14-52)||(29636056-29636094)
[»] chr7 (2 HSPs)
chr7 (55-242)||(39052249-39052437)
chr7 (325-446)||(39052588-39052715)
[»] chr3 (3 HSPs)
chr3 (55-228)||(678388-678565)
chr3 (407-446)||(678803-678842)
chr3 (20-53)||(678320-678353)
[»] chr8 (3 HSPs)
chr8 (81-225)||(3694802-3694946)
chr8 (406-446)||(3695190-3695230)
chr8 (334-379)||(3695114-3695159)
[»] scaffold0010 (3 HSPs)
scaffold0010 (333-379)||(251321-251367)
scaffold0010 (303-336)||(251277-251310)
scaffold0010 (406-446)||(251400-251440)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 51 - 259
Target Start/End: Original strand, 33053638 - 33053846
Alignment:
Q  51 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 150  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  33053638 aaatccaaatttcaaaaccttaaaccaaagatttttaattgattaccttggtggttggttcaatgtctttgaaggcttttgaatacccctttgtggttgc 33053737  T
Q  151 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 250  Q
    |||||  |||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33053738 acgacgtcggaggacggcgaaatacggtggagacggtggtggtttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 33053837  T
Q  251 cgaataggt 259  Q
     | ||||||    
T  33053838 tggataggt 33053846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 22580991 - 22580822
Alignment:
Q  55 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 154  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  22580991 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacga 22580892  T
Q  155 ccgcggaggacgaggaaataaggtggagatggtggtggtt--tattgcaactgatttttgagatggagag 222  Q
    | || |||||||| ||||||||| |||||  |||| ||||    ||||||| |||||||||||| |||||    
T  22580891 cggcagaggacgacgaaataaggcggagaaagtggcggttcgcgttgcaacagatttttgagatagagag 22580822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 34059660 - 34059510
Alignment:
Q  77 aaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacgaccgcggaggacgaggaaataag 176  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| || |||||||| ||||||||    
T  34059660 aaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtcactttgtggttgcacgacggcagaggacgacgaaataag 34059561  T
Q  177 gtggagatggtggtggtt--tattgcaactgatttttgagatggagagaga 225  Q
    | |||||  |||||||||    ||||||| |||||||||||| ||||||||    
T  34059560 gcggagaaagtggtggttcgcgttgcaacagatttttgagatagagagaga 34059510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 444
Target Start/End: Original strand, 33054167 - 33054279
Alignment:
Q  332 gagagaagttaaaatgtgtaaatgagtg-aagtgagggcggtttgggtcagctggtgcnnnnnnnnntatataaggaggttcaaagtgcaaaaaacatag 430  Q
    |||||||||||||||||||||||||| |  |||||||| |||||||||||||| ||||          |||| |||||||| |||||||||||||||||     
T  33054167 gagagaagttaaaatgtgtaaatgagagtgagtgagggtggtttgggtcagctagtgcaaaaaaata-atatgaggaggtttaaagtgcaaaaaacataa 33054265  T
Q  431 gggtatatgtgaaa 444  Q
    ||||||||||||||    
T  33054266 gggtatatgtgaaa 33054279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 33053863 - 33053919
Alignment:
Q  252 gaataggttgggtggtggcgtggtggagtttgttggtggtgctgccgccggagtgga 308  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  33053863 gaatgggttgggtggtggcgtggtggggtttggtggtggtgctgccgtcggagtgga 33053919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 446
Target Start/End: Complemental strand, 22580565 - 22580526
Alignment:
Q  407 aggttcaaagtgcaaaaaacataggggtatatgtgaaaaa 446  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22580565 aggttcaaagtgcaaaaaacataggggtatatgtgaaaaa 22580526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 34059251 - 34059215
Alignment:
Q  410 ttcaaagtgcaaaaaacataggggtatatgtgaaaaa 446  Q
    |||||||||||||||||||||||||||||||||||||    
T  34059251 ttcaaagtgcaaaaaacataggggtatatgtgaaaaa 34059215  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 33053566 - 33053604
Alignment:
Q  14 agacacatcattaggaccctcaattgcatattcaatcaa 52  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  33053566 agacatatcattaggaccctcaattgcatattcaatcaa 33053604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 22581059 - 22581026
Alignment:
Q  20 atcattaggaccctcaattgcatattcaatcaaa 53  Q
    ||||||||||||||||||||||||||||||||||    
T  22581059 atcattaggaccctcaattgcatattcaatcaaa 22581026  T

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Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 41501539 - 41501738
Alignment:
Q  51 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  41501539 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 41501638  T
Q  151 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 250  Q
    ||||| ||||||||||   |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41501639 acgacggcggaggacggcaaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 41501738  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 19140729 - 19140638
Alignment:
Q  55 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtgg 146  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  19140729 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtgg 19140638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 252 - 446
Target Start/End: Original strand, 41501764 - 41501979
Alignment:
Q  252 gaataggttgggtggtggcgtggtggagtttgttggtggtgctgccgccgg---------agtggaggaagaagagttttctaagttaagag-------- 334  Q
    |||| ||||||||||||||| ||||||||||| ||||||| ||||||||||         |||||||||||||| |||||||||||||||||            
T  41501764 gaatgggttgggtggtggcgcggtggagtttggtggtggttctgccgccggtgtggtggaagtggaggaagaagggttttctaagttaagagaagatagt 41501863  T
Q  335 ------agaagttaaaatgtgtaaatgagtgaagtgagggcggtttgggtcagctggtgcnnnnnnnnntatataaggaggttcaaagtgcaaaaaacat 428  Q
          ||||||||||||||||||||||||| ||||| || |||||||||||||||||||          |||| |||||||||||||||| ||||||||    
T  41501864 ttagagagaagttaaaatgtgtaaatgagtg-agtgatggtggtttgggtcagctggtgcaaagaaaaa-atatgaggaggttcaaagtgctaaaaacat 41501961  T
Q  429 aggggtatatgtgaaaaa 446  Q
    |||| |||||||||||||    
T  41501962 agggatatatgtgaaaaa 41501979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 34294931 - 34294869
Alignment:
Q  66 aaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggctt 128  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34294931 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaaggctt 34294869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 407 - 446
Target Start/End: Complemental strand, 19140331 - 19140292
Alignment:
Q  407 aggttcaaagtgcaaaaaacataggggtatatgtgaaaaa 446  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  19140331 aggttcaaattgcaaaaaacataggggtatatgtgaaaaa 19140292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 41501467 - 41501505
Alignment:
Q  14 agacacatcattaggaccctcaattgcatattcaatcaa 52  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  41501467 agacatatcattaggaccctcaattgcatattcaatcaa 41501505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 19140797 - 19140764
Alignment:
Q  20 atcattaggaccctcaattgcatattcaatcaaa 53  Q
    ||||||||||||||||||| ||||||||||||||    
T  19140797 atcattaggaccctcaatttcatattcaatcaaa 19140764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 148; Significance: 6e-78; HSPs: 5)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 45692 - 45493
Alignment:
Q  51 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 150  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||  ||||     
T  45692 aaatccaaatttcaaaaccctaaaccaaatatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcagttgt 45593  T
Q  151 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 250  Q
    ||||| ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45592 acgacggcggaggacggtgaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 45493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 326 - 446
Target Start/End: Complemental strand, 45360 - 45242
Alignment:
Q  326 agttaagagagaagttaaaatgtgtaaatgagtgaagtgagggcggtttgggtcagctggtgcnnnnnnnnntatataaggaggttcaaagtgcaaaaaa 425  Q
    |||| |||||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||          | || ||||||||||||||||||||||    
T  45360 agtttagagagcatttaaaatgtgtaaatgagtga-gtgagggtggtttgggtcagctggtgcaaaaaaaaaaa-atgaggaggttcaaagtgcaaaaaa 45263  T
Q  426 cataggggtatatgtgaaaaa 446  Q
    |||||||||||||||||||||    
T  45262 cataggggtatatgtgaaaaa 45242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 45467 - 45411
Alignment:
Q  252 gaataggttgggtggtggcgtggtggagtttgttggtggtgctgccgccggagtgga 308  Q
    |||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  45467 gaatgggttgggtggtggcgcggtggagtttggcggtggtgctgccgccggagtgga 45411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 45397 - 45365
Alignment:
Q  303 agtggaggaagaagagttttctaagttaagaga 335  Q
    |||||||||||||| ||||||||||||||||||    
T  45397 agtggaggaagaagggttttctaagttaagaga 45365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 45756 - 45724
Alignment:
Q  20 atcattaggaccctcaattgcatattcaatcaa 52  Q
    |||||||||||||||||||| ||||||||||||    
T  45756 atcattaggaccctcaattgaatattcaatcaa 45724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 51 - 243
Target Start/End: Complemental strand, 29636024 - 29635832
Alignment:
Q  51 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  29636024 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttgttggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 29635925  T
Q  151 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtag 243  Q
    ||||| ||||||||||  ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29635924 acgacggcggaggacggcgaaataaggtggagacggtggtgatttatcgcaactgatttttgagatggagagagaactaaaacgtgattgtag 29635832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 29635674 - 29635555
Alignment:
Q  325 aagttaagagagaagttaaaatgtgtaaatgagtgaagtgagggcggtttgggtcagctggtgcnnnnnnnnntatataaggaggttcaaagtgcaaaaa 424  Q
    ||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||          |||| |||||||||||||||||||||    
T  29635674 aagtttagagagaagttaaaatgtgtaaatgagtg-agtgatggtggtttgggtcagctggtgcaaaaaaaaa-atatgaggaggttcaaagtgcaaaaa 29635577  T
Q  425 acataggggtatatgtgaaaaa 446  Q
    |||||||||||||| |||||||    
T  29635576 acataggggtatatatgaaaaa 29635555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 29635792 - 29635736
Alignment:
Q  252 gaataggttgggtggtggcgtggtggagtttgttggtggtgctgccgccggagtgga 308  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  29635792 gaatgggttgggtggtggcggggtggagtttggtggtggtgctgccgccggagtgga 29635736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 29636094 - 29636056
Alignment:
Q  14 agacacatcattaggaccctcaattgcatattcaatcaa 52  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  29636094 agacatatcattaggaccctcaattgcatattcaatcaa 29636056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 39052249 - 39052437
Alignment:
Q  55 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||  ||||||||||||||||||    
T  39052249 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgtccctttgtggttgcacga 39052348  T
Q  155 ccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaact-acaacgtgattgta 242  Q
    | |||||| |||  |||||| | ||||||  |||||| |||  |||||| ||||||| ||||||||||||| || | ||||||||||||    
T  39052349 cggcggagaacggcgaaataggatggagaccgtggtgatttgctgcaacagattttttagatggagagagagctcaaaacgtgattgta 39052437  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 39052588 - 39052715
Alignment:
Q  325 aagttaagagagaagttaaaatgtgtaaatgagtgaagtgagggcggtttgggt------cagctggtgcnnnnnnnnntatataaggaggttcaaagtg 418  Q
    ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||      ||||||||||         ||||| |||||||||||||||    
T  39052588 aagtttagagagaagttgaaatgtgtaaatgagtgaagtgagagtggtttgggtctttggcagctggtgcaaaaaaatatatatgaggaggttcaaagtg 39052687  T
Q  419 caaaaaacataggggtatatgtgaaaaa 446  Q
    ||||||||| ||||||| ||||||||||    
T  39052688 caaaaaacacaggggtacatgtgaaaaa 39052715  T

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Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 678388 - 678565
Alignment:
Q  55 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 154  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  678388 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacga 678487  T
Q  155 ccgcggaggacgaggaaataaggtggagatggtggtggtt----tattgcaactgatttttgagatggagagagaact 228  Q
    |  | |||||||| ||||||||| |||||  |||||||||      |||||||  ||||||||||| |||||||||||    
T  678488 cgacagaggacgacgaaataaggcggagaaagtggtggttcgcgcgttgcaacaaatttttgagatagagagagaact 678565  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 446
Target Start/End: Original strand, 678803 - 678842
Alignment:
Q  407 aggttcaaagtgcaaaaaacataggggtatatgtgaaaaa 446  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  678803 aggttcaaagtgcaaaaaacataaggatatatgtgaaaaa 678842  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 678320 - 678353
Alignment:
Q  20 atcattaggaccctcaattgcatattcaatcaaa 53  Q
    ||||||||||||||||||| ||||||||||||||    
T  678320 atcattaggaccctcaattacatattcaatcaaa 678353  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 3694802 - 3694946
Alignment:
Q  81 atttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacgaccgcggaggacgaggaaataaggtgg 180  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| || ||||| |||||||||||||||||||| |||||| |||  |||||| |||||    
T  3694802 atttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgcccctttgtggttgcacgacggcggagaacggcgaaatagggtgg 3694901  T
Q  181 agatggtggtggtttattgcaactgatttttgagatggagagaga 225  Q
    |||  |||||| |||  |||||| ||||||| |||||||||||||    
T  3694902 agaccgtggtgatttgctgcaacagattttttagatggagagaga 3694946  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 3695190 - 3695230
Alignment:
Q  406 gaggttcaaagtgcaaaaaacataggggtatatgtgaaaaa 446  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  3695190 gaggttcaaagtgcaaaaaacataggggtatttgtgaaaaa 3695230  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 3695114 - 3695159
Alignment:
Q  334 gagaagttaaaatgtgtaaatgagtgaagtgagggcggtttgggtc 379  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||    
T  3695114 gagaagttgaaatgtgtagatgagtgaagtgagagtggtttgggtc 3695159  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 251321 - 251367
Alignment:
Q  333 agagaagttaaaatgtgtaaatgagtgaagtgagggcggtttgggtc 379  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||    
T  251321 agagaagttgaaatgtgtaaatgagtgaagtgagagtggtttgggtc 251367  T

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Target: scaffold0010; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 251277 - 251310
Alignment:
Q  303 agtggaggaagaagagttttctaagttaagagag 336  Q
    |||||||||||||| |||||||||||||||||||    
T  251277 agtggaggaagaagggttttctaagttaagagag 251310  T

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Target: scaffold0010; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 251400 - 251440
Alignment:
Q  406 gaggttcaaagtgcaaaaaacataggggtatatgtgaaaaa 446  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  251400 gaggttcaacatgcaaaaaacatagggatatatgtgaaaaa 251440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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