View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_high_13 (Length: 247)
Name: NF11520_high_13
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 7814642 - 7814858
Alignment:
| Q |
18 |
aatcattcattcaacaggttcatgagttctaaatggcagcatgcatgcttctcttgtttcagcacacattgctatgacagtagcccaaaaaaggaaggga |
117 |
Q |
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| T |
7814642 |
aatcattcattcaacaggttcatgagttctaaatggcagcatgcatgcttctcttgtttcagcacacattgctatgacagtagcccaaaaaaggaaggga |
7814741 |
T |
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| Q |
118 |
tctaatgggattatgcacatcatagtcaatttttatatttgatatttgagattatagatatgttgataaggattggaaaatattggcagattttctttat |
217 |
Q |
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| T |
7814742 |
tctaatgggattatgcacatcatagtcaatttttatatttgatatttgagattatagatatgttgataaggattggaaaatattggcagattttctttat |
7814841 |
T |
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| Q |
218 |
gtgttatcgttaggtct |
234 |
Q |
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| T |
7814842 |
gtgttatcgttaggtct |
7814858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 7824134 - 7824350
Alignment:
| Q |
18 |
aatcattcattcaacaggttcatgagttctaaatggcagcatgcatgcttctcttgtttcagcacacattgctatgacagtagcccaaaaaaggaaggga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7824134 |
aatcattcattcaacaggttcatgagttctaaatggcagcatgcatgcttctcttgtttcagcacacattgctatgacagtagcccaaaaaaggaaggga |
7824233 |
T |
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| Q |
118 |
tctaatgggattatgcacatcatagtcaatttttatatttgatatttgagattatagatatgttgataaggattggaaaatattggcagattttctttat |
217 |
Q |
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| T |
7824234 |
tctaatgggattatgcacatcatagtcaatttttatatttgatatttgagattatagatatgttgataaggattggaaaatattggcagattttctttat |
7824333 |
T |
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| Q |
218 |
gtgttatcgttaggtct |
234 |
Q |
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| T |
7824334 |
gtgttatcgttatgtct |
7824350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 7802202 - 7802338
Alignment:
| Q |
18 |
aatcattcattcaacaggttcatgagttctaaatggcagcatgcatgcttctcttgtttcagcacacattgctatgacagtagcccaaaaaaggaaggga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
7802202 |
aatcattcattcaacaggttcatgagttctaaatggcagcatgcatgcttctcttgtttcagcacacatcgctatgacagtagcccgaaaaaggaaggga |
7802301 |
T |
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| Q |
118 |
tctaatgggattatgcacatcatagtcaatttttata |
154 |
Q |
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| T |
7802302 |
tctaatgggattatgcacatcatagtcaatttttata |
7802338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 7802384 - 7802471
Alignment:
| Q |
146 |
atttttatatttgatatttgagattatagatatgttgataaggattggaaaatattggcagattttctttatgtgttatcgttaggtct |
234 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7802384 |
atttttatatttgat-tttgagattatagatatgttgataaggattggaaaatattgggagattttctttatgtgttatcgttaggtct |
7802471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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