View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_high_3 (Length: 415)
Name: NF11520_high_3
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 45279339 - 45279730
Alignment:
| Q |
17 |
atttttcaactatactatcatcatagcttcacacctctaaagtcaca--cacaaattgaattaatgaataataaagctatgacctatattcattagaatc |
114 |
Q |
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| T |
45279339 |
atttttcaactatactatcatcatagcttcacacctctaaagtcacacacacaaattgaattaatgaataataaagctatgacctatattcattagaatc |
45279438 |
T |
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| Q |
115 |
aataatcttccaccttaacagcttcacgaggcatttcataggcatctttaggccttgattttttaacaccagtggtagtaaaccatactttgtcagactt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45279439 |
aataatcttccaccttaacagcttcacgaggcatttcataggcatctttaggccttgattttttaacaccagtggtagtaaaccatactttgtcagactt |
45279538 |
T |
|
| Q |
215 |
ataactctcaacataaacactagtgaccttaacccacacaagaaccttggtcttcattccatctataacaatgagttttccctttgacaatgttcctttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45279539 |
ataactctcaacataaacactagtgaccttaacccacacaagaaccttggtcttcattccatctataacaatgagttttccctttgacaatgttcctttg |
45279638 |
T |
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| Q |
315 |
acgcgatttgaatatctcacaatagacgagtccttgaagcatacctcagaagggcaggacaaatgcaccatcaactttccttttgattcatc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45279639 |
acgcgatttgaatatctcacaatagacgagtccttgaagcatacctcagaaggggaggacaaatgcaccatcaactttccttttgattcatc |
45279730 |
T |
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