View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11520_high_4 (Length: 383)
Name: NF11520_high_4
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 4627735 - 4628086
Alignment:
| Q |
17 |
gaatgaaacaatagattcaaccataaacatcaaatgtgatcgatgagtatcacatagattcttgaacgcaattctagattatgaattgcccattccccta |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4627735 |
gaatgaaataatagattcaaccataaacatcaaatgtggtcgatgagtatcacatagattcttgaacgcaattctagattatgaattgtccattccccta |
4627834 |
T |
|
| Q |
117 |
atgttacaatagagaaacttctttgagaagaatttgaaggtggacccttagaaaactccattgaggagaattttggtctaactatttaatctctaagatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4627835 |
atgttacaatagagaaacttctttgagaagaatttgaaggtggacccttagaaaactccattgaggagaattttggtctaactatttaatctctaagatt |
4627934 |
T |
|
| Q |
217 |
gctaaaataaaaacttttagtcgtcatatattccnnnnnnnnnnnntatatttaaggcaaatcaaaattacgcaacatgaaatacaaatacaaataatta |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4627935 |
gctaaaataaaaacttttagtcatcatatattccaaaaagaaaaaatatatttaaggcaaatcaaaattacgcaacatgaaatacaaatacaaataatta |
4628034 |
T |
|
| Q |
317 |
caaatcacctgattgcaccgtacttgacgatatttccgaatgtggtctcttt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4628035 |
caaatcacctgattgcaccgtacttgacgatatttccgaatgtggtctcttt |
4628086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University