View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11520_low_10 (Length: 332)

Name: NF11520_low_10
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11520_low_10
NF11520_low_10
[»] chr3 (7 HSPs)
chr3 (4-177)||(36588038-36588212)
chr3 (184-230)||(37138242-37138288)
chr3 (198-232)||(31762204-31762238)
chr3 (184-230)||(46886841-46886886)
chr3 (197-230)||(27896339-27896372)
chr3 (184-236)||(36587866-36587918)
chr3 (184-224)||(55113550-55113590)
[»] chr8 (14 HSPs)
chr8 (264-316)||(39591270-39591322)
chr8 (184-222)||(44426531-44426569)
chr8 (194-234)||(31118862-31118902)
chr8 (184-223)||(2840246-2840285)
chr8 (184-223)||(2844933-2844972)
chr8 (269-316)||(8266511-8266558)
chr8 (277-316)||(27546391-27546430)
chr8 (184-230)||(37353392-37353438)
chr8 (183-220)||(24558742-24558779)
chr8 (197-230)||(31751713-31751746)
chr8 (196-236)||(1112736-1112776)
chr8 (184-232)||(8499085-8499133)
chr8 (272-316)||(28532658-28532702)
chr8 (194-238)||(32976302-32976346)
[»] chr1 (7 HSPs)
chr1 (184-230)||(4920894-4920940)
chr1 (194-230)||(48064189-48064225)
chr1 (184-230)||(34619506-34619552)
chr1 (195-232)||(11218100-11218137)
chr1 (184-236)||(27820484-27820535)
chr1 (199-231)||(35925584-35925616)
chr1 (196-236)||(38219819-38219859)
[»] chr6 (1 HSPs)
chr6 (264-308)||(13341474-13341518)
[»] chr5 (10 HSPs)
chr5 (184-236)||(10772022-10772074)
chr5 (196-227)||(8089021-8089052)
chr5 (199-238)||(11715018-11715057)
chr5 (192-227)||(17657744-17657779)
chr5 (194-235)||(6593175-6593216)
chr5 (195-224)||(11706742-11706771)
chr5 (186-235)||(40731169-40731218)
chr5 (198-230)||(5559610-5559642)
chr5 (194-230)||(29845051-29845087)
chr5 (194-230)||(30291141-30291177)
[»] chr4 (8 HSPs)
chr4 (194-230)||(54214895-54214931)
chr4 (272-314)||(46195446-46195488)
chr4 (184-233)||(17823016-17823065)
chr4 (194-239)||(50298402-50298447)
chr4 (196-240)||(6466186-6466230)
chr4 (198-230)||(19039661-19039693)
chr4 (184-240)||(30066910-30066966)
chr4 (194-222)||(43824189-43824217)
[»] chr2 (5 HSPs)
chr2 (265-316)||(35990595-35990646)
chr2 (194-236)||(9833029-9833071)
chr2 (277-313)||(9114147-9114183)
chr2 (194-230)||(28039470-28039506)
chr2 (194-230)||(40158644-40158680)
[»] chr7 (7 HSPs)
chr7 (184-230)||(31002946-31002992)
chr7 (194-224)||(32156895-32156925)
chr7 (181-230)||(425962-426011)
chr7 (194-223)||(7612346-7612375)
chr7 (196-233)||(46945772-46945809)
chr7 (209-241)||(24909527-24909559)
chr7 (194-230)||(25595986-25596022)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 36588212 - 36588038
Alignment:
Q  4 gatgtgtcgaaaagagtaatgttgcgtcggtctcgtttgcagcaacaacaagttgttcgtgaagttcttctttctatgcttcctccaggtgcgcctgctc 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36588212 gatgtgtccaaaagagtaatgttgcgtcggtctcgtttgcagcaacagcaagttgttcgtgaggttcttctttctatgcttcctccaggtgcgcctgctc 36588113  T
Q  104 aggtggattattatagaacttttac--tcttttatgtttctttcaaggattattgtattatctgctggtactactt 177  Q
    ||||||| |||||||||| ||||||  |||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  36588112 aggtgga-tattatagaatttttactttcttttatgtttctttcaaggattattgaattatctactggtattactt 36588038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 37138288 - 37138242
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||    
T  37138288 ataagcacttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 31762238 - 31762204
Alignment:
Q  198 tataagctgcaaattaagttgtttatcaaaacaag 232  Q
    ||||||||||||||||||||||||||| |||||||    
T  31762238 tataagctgcaaattaagttgtttatccaaacaag 31762204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 46886841 - 46886886
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  46886841 ataagcacttatgctataagctgcaaa-taagttgtttatccaaaca 46886886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 27896339 - 27896372
Alignment:
Q  197 ctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||||||||||||| ||||||||||||||    
T  27896339 ctataagctgcaaattaagctgtttatcaaaaca 27896372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 36587918 - 36587866
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtct 236  Q
    |||||| || ||||||||||||| ||||||| ||||||||| ||||| |||||    
T  36587918 ataagcgcttatgctataagctgtaaattaaattgtttatcgaaacagggtct 36587866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 55113590 - 55113550
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatc 224  Q
    |||| |||| |||||||||||||||||||||||||| ||||    
T  55113590 ataaacacttatgctataagctgcaaattaagttgtgtatc 55113550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 39591322 - 39591270
Alignment:
Q  264 atacttcctccgaaatgaaatataggcaaaagtgatagttgaaaagtcaatgt 316  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  39591322 atacttcctccgaaatgaaatataagcaaaagtgctagttgaaaggtcaatgt 39591270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 44426531 - 44426569
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgttta 222  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44426531 ataagcacttatgctataagctgcaaattaagttgttta 44426569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 31118862 - 31118902
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaacaaggt 234  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  31118862 atgctataagctgcacattaagttgtttatccaaacaaggt 31118902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 2840285 - 2840246
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttat 223  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  2840285 ataagcacttatgctataagctgcaaaataagttgtttat 2840246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 2844972 - 2844933
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttat 223  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  2844972 ataagcacttatgctataagctgcaaaataagttgtttat 2844933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 8266558 - 8266511
Alignment:
Q  269 tcctccgaaatgaaatataggcaaaagtgatagttgaaaagtcaatgt 316  Q
    ||||||| |||||||||||| |||||||| ||||| ||||||||||||    
T  8266558 tcctccggaatgaaatatagacaaaagtggtagttcaaaagtcaatgt 8266511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 27546430 - 27546391
Alignment:
Q  277 aatgaaatataggcaaaagtgatagttgaaaagtcaatgt 316  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  27546430 aatgaaatataagcaaaagtgatagttgaaaagttaatgt 27546391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 37353392 - 37353438
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||| | |||||||||||||||||| |||||||||||| |||||    
T  37353392 ataagcatttatgctataagctgcaaatcaagttgtttatccaaaca 37353438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 24558779 - 24558742
Alignment:
Q  183 aataagcactgatgctataagctgcaaattaagttgtt 220  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  24558779 aataaacacttatgctataagctgcaaattaagttgtt 24558742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 31751713 - 31751746
Alignment:
Q  197 ctataagctgcaaattaagttgtttatcaaaaca 230  Q
    |||||||||||||||||||||||||||| |||||    
T  31751713 ctataagctgcaaattaagttgtttatccaaaca 31751746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 1112776 - 1112736
Alignment:
Q  196 gctataagctgcaaattaagttgtttatcaaaacaaggtct 236  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  1112776 gctataagctgcaaattaagttgtttttctaaacagggtct 1112736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 8499133 - 8499085
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaag 232  Q
    |||||| || || ||||||| |||||||||||||||||||| |||||||    
T  8499133 ataagcgcttatactataagttgcaaattaagttgtttatccaaacaag 8499085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 28532702 - 28532658
Alignment:
Q  272 tccgaaatgaaatataggcaaaagtgatagttgaaaagtcaatgt 316  Q
    |||| ||||||||||| ||||||||| |||| |||||||||||||    
T  28532702 tccggaatgaaatataagcaaaagtggtagtcgaaaagtcaatgt 28532658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 32976346 - 32976302
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaacaaggtctta 238  Q
    ||||||||||||||| |||||| |||||||| ||||| |||||||    
T  32976346 atgctataagctgcatattaaggtgtttatccaaacatggtctta 32976302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 4920894 - 4920940
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||| |||||||||||||||||||||| |||||||| |||||    
T  4920894 ataagcacttatgctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 48064225 - 48064189
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||||||||||||||||||||||||| |||||    
T  48064225 atgctataagctgcaaattaagttgtttatccaaaca 48064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 34619506 - 34619552
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||| | |||||||||||||||||||||| |||||||| |||||    
T  34619506 ataagcaattatgctataagctgcaaattaagctgtttatccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 11218100 - 11218137
Alignment:
Q  195 tgctataagctgcaaattaagttgtttatcaaaacaag 232  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  11218100 tgctataagctgcaaattatgttgtttatccaaacaag 11218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 27820484 - 27820535
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtct 236  Q
    |||||| || ||||||||||||||||| ||||||||||||| ||||| |||||    
T  27820484 ataagcgcttatgctataagctgcaaa-taagttgtttatccaaacagggtct 27820535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 35925616 - 35925584
Alignment:
Q  199 ataagctgcaaattaagttgtttatcaaaacaa 231  Q
    |||||||||||||||||||||||||| ||||||    
T  35925616 ataagctgcaaattaagttgtttatccaaacaa 35925584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 38219859 - 38219819
Alignment:
Q  196 gctataagctgcaaattaagttgtttatcaaaacaaggtct 236  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  38219859 gctataagctgcaaattaagatgtttatccaaacagggtct 38219819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 13341518 - 13341474
Alignment:
Q  264 atacttcctccgaaatgaaatataggcaaaagtgatagttgaaaa 308  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||    
T  13341518 atactccctccgaaatgaaatataagcaaaaatgatagttgaaaa 13341474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 10772022 - 10772074
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtct 236  Q
    ||||||||| |||||||||||||||||||||||||| |||  ||||| |||||    
T  10772022 ataagcacttatgctataagctgcaaattaagttgtatattcaaacatggtct 10772074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 8089052 - 8089021
Alignment:
Q  196 gctataagctgcaaattaagttgtttatcaaa 227  Q
    ||||||||||||||||||||||||||||||||    
T  8089052 gctataagctgcaaattaagttgtttatcaaa 8089021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 11715018 - 11715057
Alignment:
Q  199 ataagctgcaaattaagttgtttatcaaaacaaggtctta 238  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaacagggtctta 11715057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 17657779 - 17657744
Alignment:
Q  192 tgatgctataagctgcaaattaagttgtttatcaaa 227  Q
    |||||||||||||| |||||||||||||||||||||    
T  17657779 tgatgctataagctacaaattaagttgtttatcaaa 17657744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 6593216 - 6593175
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaacaaggtc 235  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||    
T  6593216 atgctataagctgtaaattaagttgtttatccaaacagggtc 6593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 11706771 - 11706742
Alignment:
Q  195 tgctataagctgcaaattaagttgtttatc 224  Q
    ||||||||||||||||||||||||||||||    
T  11706771 tgctataagctgcaaattaagttgtttatc 11706742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 40731218 - 40731169
Alignment:
Q  186 aagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtc 235  Q
    ||||||| ||||||||||||||||| ||| ||||||||| ||||| ||||    
T  40731218 aagcacttatgctataagctgcaaaataatttgtttatccaaacatggtc 40731169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 5559642 - 5559610
Alignment:
Q  198 tataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||||||||||||||||||||| |||||    
T  5559642 tataagctgcaaattaagttgtttatccaaaca 5559610  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 29845051 - 29845087
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    |||||||||| |||||||||||||||||||| |||||    
T  29845051 atgctataagttgcaaattaagttgtttatccaaaca 29845087  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 30291177 - 30291141
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  30291177 atgctataagctgcaaattaagttggttatccaaaca 30291141  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 54214931 - 54214895
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||||||||||||||||||||||||| |||||    
T  54214931 atgctataagctgcaaattaagttgtttatccaaaca 54214895  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 46195488 - 46195446
Alignment:
Q  272 tccgaaatgaaatataggcaaaagtgatagttgaaaagtcaat 314  Q
    ||||||||||||||||  ||||||||| |||||||||||||||    
T  46195488 tccgaaatgaaatataaacaaaagtgaaagttgaaaagtcaat 46195446  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 17823065 - 17823016
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaagg 233  Q
    |||||| || ||||||| |||||||||||||| |||||||| ||||||||    
T  17823065 ataagcccttatgctatgagctgcaaattaagctgtttatccaaacaagg 17823016  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 50298447 - 50298402
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaacaaggtcttag 239  Q
    |||||||||||| |||||||||||||||||| ||||| || |||||    
T  50298447 atgctataagcttcaaattaagttgtttatccaaacatggccttag 50298402  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 6466186 - 6466230
Alignment:
Q  196 gctataagctgcaaattaagttgtttatcaaaacaaggtcttagt 240  Q
    |||||||||||||||  |||||||||||| ||||||| |||||||    
T  6466186 gctataagctgcaaaagaagttgtttatccaaacaagatcttagt 6466230  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 19039693 - 19039661
Alignment:
Q  198 tataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||||||||||||||||||||| |||||    
T  19039693 tataagctgcaaattaagttgtttatccaaaca 19039661  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 30066910 - 30066966
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtcttagt 240  Q
    |||||| || ||||||||||||||||||||| ||||||||  ||||| ||| |||||    
T  30066910 ataagcgcttatgctataagctgcaaattaaattgtttatgcaaacagggttttagt 30066966  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 43824217 - 43824189
Alignment:
Q  194 atgctataagctgcaaattaagttgttta 222  Q
    |||||||||||||||||||||||||||||    
T  43824217 atgctataagctgcaaattaagttgttta 43824189  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 35990646 - 35990595
Alignment:
Q  265 tacttcctccgaaatgaaatataggcaaaagtgatagttgaaaagtcaatgt 316  Q
    |||| |||||| ||||||||||| ||||||| | ||||||||||||||||||    
T  35990646 tactccctccggaatgaaatataagcaaaagcggtagttgaaaagtcaatgt 35990595  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 9833071 - 9833029
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaacaaggtct 236  Q
    ||||||||||||| |||||||||||||||| | ||||||||||    
T  9833071 atgctataagctgtaaattaagttgtttataagaacaaggtct 9833029  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 9114147 - 9114183
Alignment:
Q  277 aatgaaatataggcaaaagtgatagttgaaaagtcaa 313  Q
    |||||||||||  ||||||||||||||||||||||||    
T  9114147 aatgaaatataaacaaaagtgatagttgaaaagtcaa 9114183  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 28039470 - 28039506
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  28039470 atgctataaactgcaaattaagttgtttatccaaaca 28039506  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 40158680 - 40158644
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    |||||||||||| |||||||||||||||||| |||||    
T  40158680 atgctataagctacaaattaagttgtttatccaaaca 40158644  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 31002946 - 31002992
Alignment:
Q  184 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    |||||| || |||||||||| |||||||||||||||||||| |||||    
T  31002946 ataagcgcttatgctataagatgcaaattaagttgtttatccaaaca 31002992  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 224
Target Start/End: Complemental strand, 32156925 - 32156895
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatc 224  Q
    |||||||||||||||||||||||||||||||    
T  32156925 atgctataagctgcaaattaagttgtttatc 32156895  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 425962 - 426011
Alignment:
Q  181 acaataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    ||||||||| || ||||||||||||||||| |||||| |||||| |||||    
T  425962 acaataagcgcttatgctataagctgcaaaataagttatttatccaaaca 426011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 7612375 - 7612346
Alignment:
Q  194 atgctataagctgcaaattaagttgtttat 223  Q
    ||||||||||||||||||||||||||||||    
T  7612375 atgctataagctgcaaattaagttgtttat 7612346  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 46945809 - 46945772
Alignment:
Q  196 gctataagctgcaaattaagttgtttatcaaaacaagg 233  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  46945809 gctataagctgcaaactaagttgtttatccaaacaagg 46945772  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 24909559 - 24909527
Alignment:
Q  209 aattaagttgtttatcaaaacaaggtcttagta 241  Q
    |||||||||||||||||||||||||| ||||||    
T  24909559 aattaagttgtttatcaaaacaaggttttagta 24909527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 25596022 - 25595986
Alignment:
Q  194 atgctataagctgcaaattaagttgtttatcaaaaca 230  Q
    |||||||||||||||| |||||||||||||| |||||    
T  25596022 atgctataagctgcaagttaagttgtttatccaaaca 25595986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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