View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_low_11 (Length: 332)
Name: NF11520_low_11
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 3014852 - 3015163
Alignment:
| Q |
12 |
agagagtatcaaccttgataaattctttgaggatgttgagaatgtgaaagaagacatgaggcttgtcgaaaagctttatagaaaattacaagaggcaaat |
111 |
Q |
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| T |
3014852 |
agagagtatcaaccttgataaattctttgaggatgttgagaatgtgaaagaagacatgaggcttgtcgaaaagctttatagaaaattacaagaggcaaat |
3014951 |
T |
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| Q |
112 |
gaagaaagcaaaattgtccacaatgctaaaacaatgaaagatcttagagcaaggatggataaagatgttgaacaggttctcaaaagagtcaaaatcatta |
211 |
Q |
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| T |
3014952 |
gaagaaagcaaaattgtccacaatgctaaaacaatgaaagatcttagagcaaggatggataaagatgttgaacaggttctcaaaagagtcaaaatcatta |
3015051 |
T |
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| Q |
212 |
agggtaagcttgaagcattagaacgttcgaatgccgcgaatagaaacattccagggtgtggtccaggttcatcagcagatagaacaagaacttcagtggt |
311 |
Q |
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| T |
3015052 |
agggtaagcttgaagcattagaacgttcgaatgccgcgaatagaaacattccagggtgtggtccaggttcatcagcagatagaacaagaacttcagtggt |
3015151 |
T |
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| Q |
312 |
tagtggattggg |
323 |
Q |
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| T |
3015152 |
tagtggattggg |
3015163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 88 - 317
Target Start/End: Complemental strand, 35956209 - 35955980
Alignment:
| Q |
88 |
tatagaaaattacaagaggcaaatgaagaaagcaaaattgtccacaatgctaaaacaatgaaagatcttagagcaaggatggataaagatgttgaacagg |
187 |
Q |
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| T |
35956209 |
tataggaaattgaaagaggctaatgaagaaagtaaaaccgtgcacaatgctaaaaccatgaaagaacttcgagcacgaatggacaaagatgttgaacaag |
35956110 |
T |
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| Q |
188 |
ttctcaaaagagtcaaaatcattaagggtaagcttgaagcattagaacgttcgaatgccgcgaatagaaacattccagggtgtggtccaggttcatcagc |
287 |
Q |
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| T |
35956109 |
tccttaaacgtgtcaaaattattaaaggaaaactcgaagcattggatcgttcaaatgcagctaatagaaacattccagggtgtggtccaggttcatcagc |
35956010 |
T |
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| Q |
288 |
agatagaacaagaacttcagtggttagtgg |
317 |
Q |
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| T |
35956009 |
agatagaactagaacttcagtggttagtgg |
35955980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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