View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_low_12 (Length: 283)
Name: NF11520_low_12
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 34919708 - 34919983
Alignment:
| Q |
8 |
caattcgatttaatttcaacccaagaagctaaatcatctnnnnnnntaagcttttgatcacaagtaccaaccataccatgatcaccaaccataataatac |
107 |
Q |
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| T |
34919708 |
caattcgatttaatttcaacccaagaagctaaatcatctaaaaaaataagcttttgatcacaagtaccaaccataccatgatcaccaaccataataatac |
34919807 |
T |
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| Q |
108 |
taacatcctcaaaaacccctcttttttccaacccatgaatcaacctccctattatcccatcaatcctagcaacagcttgagtaacctcatcatcatcagg |
207 |
Q |
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| T |
34919808 |
taacatcctcaaaaacccctcttttttccaacccatgaatcaacctccctattatcccatcaatcctagcaacagcttgagtaacctcatcatcatcagg |
34919907 |
T |
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| Q |
208 |
accaacttgatgaccttgatgatcaggatcctcaaaataaagcgtcataaaaaccggtatatcatcaagatccaaa |
283 |
Q |
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| T |
34919908 |
accaacttgatgaccttgatgatcaggatcctcaaaataaagcgtcataaaaaccggtatatcatcaagatccaaa |
34919983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 59 - 274
Target Start/End: Complemental strand, 42683084 - 42682869
Alignment:
| Q |
59 |
ttttgatcacaagtaccaaccataccatgatcaccaaccataataatactaacatcctcaaaaacccctcttttttccaacccatgaatcaacctcccta |
158 |
Q |
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|||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||| || ||| ||||||||| |||| |
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| T |
42683084 |
tttttatcacaagtaccaaccattccatgatcacctaccataataatagtaacatcctcaaaaacccctctttgttctaaaccactaatcaacctaccta |
42682985 |
T |
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| Q |
159 |
ttatcccatcaatcctagcaacagcttgagtaacctcatcatcatcaggaccaacttgatgaccttgatgatcaggatcctcaaaataaagcgtcataaa |
258 |
Q |
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| T |
42682984 |
tcatattatcaattctagaaacagctttagtaatctcaggatcatcagatccaactttatgaccttgatgatcagggtcctcaaaataaagtgtcataaa |
42682885 |
T |
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| Q |
259 |
aaccggtatatcatca |
274 |
Q |
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| T |
42682884 |
atcaggaatatcatca |
42682869 |
T |
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