View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_low_17 (Length: 231)
Name: NF11520_low_17
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 34084954 - 34085150
Alignment:
| Q |
18 |
ctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatggtgacactttgcattaagctgaagaa |
117 |
Q |
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| T |
34084954 |
ctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatggtgacactttgcattaagctgaagaa |
34085053 |
T |
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| Q |
118 |
aacactcaagtaattcttgaagatcattttctgaataaatctgtctctccaatatcatttgaagtatagagtttcgaaaatcttcatacggctcctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085054 |
aacactcaagtaattcttgaagatcattttctgaataaatctctctctccaatatcatttgaagtatagagtttcgaaaatcttcatacggctcctt |
34085150 |
T |
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