View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_low_18 (Length: 214)
Name: NF11520_low_18
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 17861399 - 17861585
Alignment:
| Q |
17 |
aaatacatatcttttcatagtattaaaaaattcagcatatgacacatccaataggatcctgttccactcttgaaacagaagaatattgaatatattgtgg |
116 |
Q |
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| T |
17861399 |
aaatacatatcttttcatagtattaaaaaattcagcatatgacacatccaataggatcttgttccactcttgaaacagaagaatattgaatatattgtgg |
17861498 |
T |
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| Q |
117 |
ttgttgcatgtaataataatgaagataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttctt |
203 |
Q |
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| T |
17861499 |
ttgttgcatgtaataataatgaggataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttctt |
17861585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 17872001 - 17872187
Alignment:
| Q |
17 |
aaatacatatcttttcatagtattaaaaaattcagcatatgacacatccaataggatcctgttccactcttgaaacagaagaatattgaatatattgtgg |
116 |
Q |
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||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17872001 |
aaatacaaatcttttcaaagtattaagaaattcagcatatgacacatccaacaggatcttgttccactcttgaaacagaagaatattgaatatattgtgg |
17872100 |
T |
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| Q |
117 |
ttgttgcatgtaataataatgaagataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttctt |
203 |
Q |
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| T |
17872101 |
ttgttgcatgtaataataatgaggataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttctt |
17872187 |
T |
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