View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_low_3 (Length: 458)
Name: NF11520_low_3
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 3015657 - 3015231
Alignment:
| Q |
16 |
acatcaacaatggaaacaggagcacgatgacgaggacgatagcaagaagtatgacataacaagtccatttccttgaatccttttgatgctctcttgcctc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015657 |
acatcaacaatggaaacaggagcacgatgacgaggacgatagcaagaagtatgacataacaagtccatttccttgaatccttttgatgctctcttgcctc |
3015558 |
T |
|
| Q |
116 |
atgaagttgttcagtacctcttctaacaaaagaactagcatgtgcaacatgactctctatgttattcaattgttgtccttgtgactcaacaagtgctgcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015557 |
atgaagttgttcagtacctcttctaacaaaagaactagcatgtgcaacatgactctctatgttattcaattgttgtccttgtgactcaacaagtgctgcc |
3015458 |
T |
|
| Q |
216 |
atgtccaaaaatacttgatgcaactcaatcaagtttttctctatttccttaacagcatcatgtctttcttgaatctcagatattgtgtccataatctgac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015457 |
atgtccaaaaatacttgatgcaactcaatcaagtttttctctatttccttaacagcatcatgtctttcttgaatctcagatattgtgtccataatctgac |
3015358 |
T |
|
| Q |
316 |
ccctaccttgttcttgaattgctctttgcataaaagtttcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015357 |
ccctaccttgttcttgaattgctctttgcataaaagtttcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttat |
3015258 |
T |
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| Q |
416 |
tgtaaaataccttctttcaattgtttc |
442 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
3015257 |
tgtaaaataccttctttcaattgtttc |
3015231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 58 - 427
Target Start/End: Original strand, 35955522 - 35955891
Alignment:
| Q |
58 |
caagaagtatgacataacaagtccatttccttgaatccttttgatgctctcttgcctcatgaagttgttcagtacctcttctaacaaaagaactagcatg |
157 |
Q |
| |
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|||||| |||| ||||||| ||||||||||| |||| |||||| ||| |||| || || ||||||||||| || |||||||| ||||||||||| ||||| |
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| T |
35955522 |
caagaattatggcataacatgtccatttcctagaattcttttgttgcactctagcttcctgaagttgttctgtccctcttcttacaaaagaacttgcatg |
35955621 |
T |
|
| Q |
158 |
tgcaacatgactctctatgttattcaattgttgtccttgtgactcaacaagtgctgccatgtccaaaaatacttgatgcaactcaatcaagtttttctct |
257 |
Q |
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||||||||| ||||| || ||||| | |||||||||||| ||||| || | | |||||| |||||||| |||||||||||||||||||| || ||||| |
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| T |
35955622 |
tgcaacatggctctcaatattattaagttgttgtccttgagactctaccaaagttgccatatccaaaaacacttgatgcaactcaatcaaattcttctca |
35955721 |
T |
|
| Q |
258 |
atttccttaacagcatcatgtctttcttgaatctcagatattgtgtccataatctgacccctaccttgttcttgaattgctctttgcataaaagtttcac |
357 |
Q |
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|||||||||||||||||||||||||||||||| || || || || ||||| || |||||||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
35955722 |
atttccttaacagcatcatgtctttcttgaatttccgaaatagtatccattatttgacccctaccttgttcttgaattgccctttgcatgaaattttcac |
35955821 |
T |
|
| Q |
358 |
tttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttattgtaaaatacct |
427 |
Q |
| |
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|||||||||||||||||||||| || ||||| |||||||| |||||||| || ||||||||||||||||| |
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|
| T |
35955822 |
tttctccacttgatatcaaattttctatagtttcttcatccgctttctctcccgttattgtaaaatacct |
35955891 |
T |
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