View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_low_4 (Length: 445)
Name: NF11520_low_4
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 30941750 - 30942155
Alignment:
| Q |
19 |
catcaacacacacacaagaaaatgtctactagtggtagcaattttcatggcaagaatttggagcaagaaacatcatcaacaaccatttcagtagcgacac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941750 |
catcaacacacacacaagaaaatgtctactagtggtagcaattttcatggcaagaatttggagcaagaaacatcatcaacaaccatttcagtagcgacac |
30941849 |
T |
|
| Q |
119 |
ttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941850 |
ttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagcaa |
30941949 |
T |
|
| Q |
219 |
ccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941950 |
ccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcacct |
30942049 |
T |
|
| Q |
319 |
tgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaatc |
418 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942050 |
tgtacttgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaatc |
30942149 |
T |
|
| Q |
419 |
cttttg |
424 |
Q |
| |
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|||||| |
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| T |
30942150 |
cttttg |
30942155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
127 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatac |
171 |
Q |
| |
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||||| |||||||||||| | |||||||||||||||||||||||| |
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|
| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 115 - 422
Target Start/End: Original strand, 39556357 - 39556664
Alignment:
| Q |
115 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaata |
214 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| || |||||| |
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| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
|
| Q |
215 |
gcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgc |
314 |
Q |
| |
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||||||||| ||||| || ||| | || ||||| |||||||||||||| || |||||| ||||||||||||||||||||||||| ||||| ||||| || |
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| T |
39556457 |
ccaaccatgtgttggaatttcttaggtatttagatcaatttggaaaaaccaaagttcatttacaaggttgtatgttttatggacagccagagccaccagc |
39556556 |
T |
|
| Q |
315 |
accgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatact |
414 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||| || ||||||||||||||||| ||||| || || |||| || ||| |
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| T |
39556557 |
accttgtacatgtccacttagacaagcttggggaagtcttgatgctctaattgggaggttaagggctgcttatgaggaaaacggcggaactccagagact |
39556656 |
T |
|
| Q |
415 |
aatccttt |
422 |
Q |
| |
|
|||||||| |
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|
| T |
39556657 |
aatccttt |
39556664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 118 - 424
Target Start/End: Complemental strand, 32002397 - 32002091
Alignment:
| Q |
118 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagca |
217 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||| ||| | || ||| | |
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|
| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaa |
32002298 |
T |
|
| Q |
218 |
accatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcacc |
317 |
Q |
| |
|
|||||||| | || ||||| | ||||| || |||||||||||||| || || || ||||||||||| |||||| |||||| | |||||||||| ||| |
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|
| T |
32002297 |
accatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggacc |
32002198 |
T |
|
| Q |
318 |
gtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaat |
417 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||||||||| | ||||| |||||| |
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|
| T |
32002197 |
atgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggattacctgaaactaat |
32002098 |
T |
|
| Q |
418 |
ccttttg |
424 |
Q |
| |
|
||||||| |
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|
| T |
32002097 |
ccttttg |
32002091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 393
Target Start/End: Original strand, 4863129 - 4863290
Alignment:
| Q |
232 |
ttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccgtgtacctgtcctc |
331 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | || ||||| || |||| |||||||| || || || ||||||||||| ||||| |
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| T |
4863129 |
ttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccggcaccgtgtacttgtccgt |
4863228 |
T |
|
| Q |
332 |
ttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaa |
393 |
Q |
| |
|
| |||||||||||||| || | ||||| || || ||| | |||| ||||||||||||||| |
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|
| T |
4863229 |
tgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaa |
4863290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 33672141 - 33672046
Alignment:
| Q |
307 |
ccacctgcaccgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtggg |
402 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||||||||||||| | ||||| | ||||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
33672141 |
ccacctgcaccttgtccttgtcctctacgacaagcttggggaagtcttgatgcattgattggaagactaagagctgcttttgaagaaaatggtggg |
33672046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 402
Target Start/End: Original strand, 15970300 - 15970455
Alignment:
| Q |
247 |
gaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggg |
346 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||||| ||| | ||||||||| | ||| | ||||||||| | ||||| |||| |
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| T |
15970300 |
gaccaatttggaaaaactaaggttcatactctgatttgtcccttttatggacatccaaatccacctgcatcatgtccatgtcctcttcgccaagcgtggg |
15970399 |
T |
|
| Q |
347 |
gaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtggg |
402 |
Q |
| |
|
| || | ||||| |||||||| ||| | || ||||||| |||||| ||||||||| |
|
|
| T |
15970400 |
gtagtcttgatgcacttattgggagacttagagctgcttttgaagagaatggtggg |
15970455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 350
Target Start/End: Original strand, 35814540 - 35814703
Alignment:
| Q |
187 |
ccaccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgta |
286 |
Q |
| |
|
|||| ||||||||| ||||| || || |||||||||| | ||||| ||||||||| | || |||||||| || ||||||||||| | |||||||| | |
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|
| T |
35814540 |
ccactagttccactatcacactgtaacttcaaccatgttcttgattttcttcgttaccttgatcaatttggtaagactaaggttcactttcaaggttgca |
35814639 |
T |
|
| Q |
287 |
tgttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggggaag |
350 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||| | |||||||| | |||||||||||||| |
|
|
| T |
35814640 |
tcttctttggacaacctaccccacctgcaccttgtgcttgtcctctcaagcaagcttggggaag |
35814703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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