View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11520_low_7 (Length: 339)
Name: NF11520_low_7
Description: NF11520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11520_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 43020841 - 43020519
Alignment:
| Q |
1 |
tagataatcccatttgttannnnnnnggatttaattattgtagtctttggaagttatttctcttggcttcatttattgttaatagtatttatctatcaag |
100 |
Q |
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| T |
43020841 |
tagataatcccatttgttatttttttggatttaattattgtagtctttggaagttatttctcttggcttcatttattgttaatagtatttatctatcaag |
43020742 |
T |
|
| Q |
101 |
ttatattgtgtggttgtttacgaaatggttgagggagctattccggcgtgtctcgcctattttgatgatgaaatattggattaactgcatttctgcatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43020741 |
ttatattgtgtggttgtttacgaaatggttgagggagctattccggcgtgtctcgcctattttgatgatgaaatattggattaactgcatttctgcatat |
43020642 |
T |
|
| Q |
201 |
gctaatggtgcagtgctgttataaaatcttgattctccgtttcaaaatctctctcgtgaccatatttattcaaaccatggtttatggacatgatttgaag |
300 |
Q |
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| T |
43020641 |
gctaatggtgcagtgctgttataaaatcttgattctccgtttcaaaatctctctcgtgaccatatttattcaaaccatggtttatggacatgatttgaag |
43020542 |
T |
|
| Q |
301 |
cattttgtctttgtattgtaatt |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
43020541 |
cattttgtctttgtattgtaatt |
43020519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 42810019 - 42809857
Alignment:
| Q |
1 |
tagataatcccatttgttannnnnnnggatttaattattgtagtctttggaagttatttctcttggcttcatttattgttaatagtatttatctatcaag |
100 |
Q |
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| T |
42810019 |
tagataatcccatttgttatttttttggatttaattattgtagtctttggaagttatttctcttggcttcatttattgttaatagtatttatctatcaag |
42809920 |
T |
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| Q |
101 |
ttatattgtgtggttgtttacgaaatggttgagggagctattccggcgtgtctcgcctatttt |
163 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
42809919 |
ttatattgcgtggttgtttacgaaatggttgagggagctattccggcttgtctcacctatttt |
42809857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 35059321 - 35059166
Alignment:
| Q |
165 |
atgatgaaatattggattaactgcatttctgcatatgctaatggtgcagtgctgttataaaatcttgattctccgtttcaaaatctctctcgtgaccata |
264 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
35059321 |
atgatgaaatattggat-aactgcattgctgcatatgataacggtgtagtgctgttataaaatcttgattcgccgtttcaaaatctctctcgtggccat- |
35059224 |
T |
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| Q |
265 |
tttattcaaaccatggtttatggacatgatttgaagcattttgtctttgtattgtaatt |
323 |
Q |
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| T |
35059223 |
-ttattcaaaccatggtttatggacatgatttgaagcattttgtctttgtattgtaatt |
35059166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 35059522 - 35059360
Alignment:
| Q |
1 |
tagataatcccatttgttannnnnnnggatttaattattgtagtctttggaagttatttctcttggcttcatttattgttaatagtatttatctatcaag |
100 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |
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| T |
35059522 |
tagataatcccatttgttatttttttgtatttaattatagtagtctttggaagttatttcttttggcttcatttattgattatagtatttatctatcaag |
35059423 |
T |
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| Q |
101 |
ttatattgtgtggttgtttacgaaatggttgagggagctattccggcgtgtctcgcctatttt |
163 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
35059422 |
ttatattgtgtggttgtttccgaaatggttgagggagcgattccggcgtgtctcacctatttt |
35059360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 162 - 323
Target Start/End: Complemental strand, 42809812 - 42809656
Alignment:
| Q |
162 |
ttgatgatgaaatattggattaactgcatttctgcatatgctaatggtgcagtgctgttataaaatcttgattctccgtttcaaaatctctctcgtgacc |
261 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
42809812 |
ttgatgatgaaatattggat-aactgcattgctgcatatgataatggtgcagtgctgttataaaatcttgattcgccgtttcaaaat--ctcttgtgacc |
42809716 |
T |
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| Q |
262 |
atatttattcaaaccatggtttatggacatgatttgaagcattttgtctttgtattgtaatt |
323 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| |
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| T |
42809715 |
--atttattcaaaccatggtttatgggcatgatttgaagcattttatctctgtattgtaatt |
42809656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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