View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11521_high_7 (Length: 355)
Name: NF11521_high_7
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 41103489 - 41103148
Alignment:
| Q |
1 |
gactgggaaatgcttgaatataaaatcaagtgttggttaaacgccgtcaaagtcgccgttaacactctgtttcacggcgagagaatactctgcaattata |
100 |
Q |
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| T |
41103489 |
gactgggaaatgcttgaatataaaatgaagtgttggttaaacgccgtcaaagtcgccgttaacactctgtttcacggcgagagaatactctgcaattata |
41103390 |
T |
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| Q |
101 |
ttttcgattcgccggagaagaacaacatcggagaatcgtgtttcgctgatatttgcagagaaagcgcactgatgctgtttgcattcccggaaaacgtggc |
200 |
Q |
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| T |
41103389 |
ttttcgattcgccggagaagaacaacatcggagaatcgtgtttcgctgatatttgcagagaaagcgcattaatgctgtttgcattcccggaaaacgtggc |
41103290 |
T |
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| Q |
201 |
aaaatgcaagaaaactccggagaaaatgttcagaacgcttgatttatacgaagcgatttcagaaaattggaatcaaattgaatcaattttttcgtcggaa |
300 |
Q |
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| T |
41103289 |
aaaatgcaagaaaactccggagaaaatgttcagaacgcttgatttatacgaagcgatttcagaaaattggaatcaaattgaatcaattttttcgtcggaa |
41103190 |
T |
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| Q |
301 |
tcaaactcaccgatcagatcgcaagtcgttgcttcacaggtt |
342 |
Q |
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| T |
41103189 |
tcaaactcaccgatcagatcgcaagtcgttgcttcacaggtt |
41103148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 23129108 - 23129044
Alignment:
| Q |
199 |
gcaaaatgcaagaaaactccggagaaaatgttcagaacgcttgatttatacgaagcgatttcaga |
263 |
Q |
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| T |
23129108 |
gcaaaatgcaagaaaactcctgagaaaatgttcagaactcttgatttatacgaagcaatttcaga |
23129044 |
T |
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