View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11521_high_8 (Length: 333)
Name: NF11521_high_8
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 19264547 - 19264230
Alignment:
| Q |
1 |
agacccgaacagatgtattgcggctcagaatacggaaagattacatggaagctgagtagaactcctatgcaaaccattatttctgatgtcaacagaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19264547 |
agacccgaacagatgtattgcggctcagaatacggaaagattacatggaagctgagtagaactcctatgcaaaccattatttctgatgtcaacagaattt |
19264448 |
T |
|
| Q |
101 |
gcctaaaacagatagaaaatatgaccgctcagaccaatatgaaaaataatacaattttcaaccacattaaggctcttcatggttctttcannnnnnngaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19264447 |
gcctaaaacagatagaaaatatgaccgctcagaccaatatgaaaaataatacaattttcaaccacattaaggctcttcatggttctttcatttttttgaa |
19264348 |
T |
|
| Q |
201 |
aagagtaaacattataatctctatagggtgnnnnnnnnnnnnnnnnnnnnnnnagcgatcattggtatgcattatgcatcacaacacatctttaggtaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19264347 |
aagagtaaacattataatctctatagggtgttttctttttccttcgcttttttagcgatcattggtatgcattatgcatcacaacacatctttaggtaaa |
19264248 |
T |
|
| Q |
301 |
ttcaattacagaagaaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19264247 |
ttcaattacagaagaaac |
19264230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University