View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11521_low_1 (Length: 609)
Name: NF11521_low_1
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 10001870 - 10001613
Alignment:
| Q |
20 |
gcctgcagaactctgtgaaaagtaccacctttgtgagtctgcaacgatttcttcacaggttcatggaaatagttgtggcttttgtaaagatactgttgca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10001870 |
gcctgcagaactctgtgaaaagtaccacctttgtgagtctgcaacgatttcttcacaggttcatggaaatagttgtggcttttgtaaagatactgttgca |
10001771 |
T |
|
| Q |
120 |
gaattattggttgagttgaatgatcctgaaactaaggttagtgattttactgctctacattacccctccttactatgagcatt-gagattcgtatcgtga |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |
|
|
| T |
10001770 |
gaattattagttgagttgaatgatcctgaaactaaggttagtgattttactgctctacattacccctccttaatatgagcattagagattcgtatcatga |
10001671 |
T |
|
| Q |
219 |
atcaaaagaactattttctgaatcgcggtatttgaatcttattatgaatcgtaagatacattactaata |
287 |
Q |
| |
|
||| ||| ||||||| |||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10001670 |
atcgaaataactatt-----------ggtaatcgaatcttattatgaatcgtaagatgcattactaata |
10001613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 425 - 536
Target Start/End: Complemental strand, 10000401 - 10000291
Alignment:
| Q |
425 |
gttgaaccggattgaatcggggctgaaccatttcaaccagggttggttgaaccggtatatttgttgcatattttaaccaattaaaccatgactcagaagt |
524 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10000401 |
gttgaaccggattgaatcgggactgaaccatttcaacc-gagttggttgaaccggtgtattcgctgcatattttaaccaattaaatcatgactcagaagt |
10000303 |
T |
|
| Q |
525 |
ttcacaggttct |
536 |
Q |
| |
|
||||| |||||| |
|
|
| T |
10000302 |
ttcaccggttct |
10000291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 10001145 - 10001059
Alignment:
| Q |
282 |
ctaatactttattataaaatgacagctagagataattcagaaactactaaaggcatgcaataatatggagaagtataagaaggaggt |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10001145 |
ctaaaactttattataaaatgacagctagagataattcagaaactactgaaggcatgcaacaatatggagaagtataagaaggaggt |
10001059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 38909276 - 38909308
Alignment:
| Q |
248 |
atttgaatcttattatgaatcgtaagatacatt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38909276 |
atttgaatcttattatgaatcgtaagatacatt |
38909308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 7295740 - 7295705
Alignment:
| Q |
252 |
gaatcttattatgaatcgtaagatacattactaata |
287 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7295740 |
gaatcttattatgaattgtaagatacattactaata |
7295705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 546 - 587
Target Start/End: Complemental strand, 5455345 - 5455304
Alignment:
| Q |
546 |
ctgccactcataaatatcagcacaaacactatctatatccct |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5455345 |
ctgccactcataaatatcagcacaaacactatctatatccct |
5455304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 2402743 - 2402709
Alignment:
| Q |
253 |
aatcttattatgaatcgtaagatacattactaata |
287 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2402743 |
aatcttactatgaatcgtaagatacattactaata |
2402709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 27935449 - 27935506
Alignment:
| Q |
224 |
aagaactattttctgaatcgcggtatttgaatcttattatgaatcgtaagatacattact |
283 |
Q |
| |
|
||||||||||||||||| || | | ||||||||||||||||||| || ||||||||||| |
|
|
| T |
27935449 |
aagaactattttctgaaacgtg--aattgaatcttattatgaatcatatgatacattact |
27935506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 546 - 587
Target Start/End: Original strand, 42986424 - 42986465
Alignment:
| Q |
546 |
ctgccactcataaatatcagcacaaacactatctatatccct |
587 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
42986424 |
ctgccactcataaatatctgcacatacactatctatatccct |
42986465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University