View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11521_low_11 (Length: 268)
Name: NF11521_low_11
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 28438005 - 28437767
Alignment:
| Q |
19 |
tttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttg |
118 |
Q |
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| T |
28438005 |
tttatgtcacaatggatgatttgggtgcaacagtcctcatgcaagtaaataagacctcttgcaattccggtggcaatttgaactcgttggttccaacttg |
28437906 |
T |
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| Q |
119 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
218 |
Q |
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| T |
28437905 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacaccaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
28437806 |
T |
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| Q |
219 |
aacaagattcctatgatgagtttcgagtatcacattcat |
257 |
Q |
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| T |
28437805 |
aacaagattcctatgatgagtttcgagtatcacattcat |
28437767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 28488061 - 28487839
Alignment:
| Q |
19 |
tttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttg |
118 |
Q |
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| T |
28488061 |
tttatatcacaatggatgatttgggtgcaacatccctcgtgcaagtaaacaagacctcttgcaattcccaggataatgtggactcgttggttccaatttg |
28487962 |
T |
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| Q |
119 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
218 |
Q |
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| T |
28487961 |
gttttaaagaagtgaaaagaaagctcgctaaagttccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacg |
28487862 |
T |
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| Q |
219 |
aacaagattcctatgatgagttt |
241 |
Q |
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| T |
28487861 |
aacaagattcctatgaagagttt |
28487839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 28466300 - 28466085
Alignment:
| Q |
19 |
tttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttg |
118 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||| || |||||||||||||||| || |
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| T |
28466300 |
tttatatcacaatggatgatttgggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccaatctg |
28466201 |
T |
|
| Q |
119 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
218 |
Q |
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| T |
28466200 |
gttttaatggggtgaaaagaaagctcgctaaagtaccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacg |
28466101 |
T |
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| Q |
219 |
aacaagattcctatga |
234 |
Q |
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| T |
28466100 |
aacaagattcctatga |
28466085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 28445454 - 28445232
Alignment:
| Q |
19 |
tttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttg |
118 |
Q |
| |
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||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| || | ||| || |||||||||||||||| || |
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| T |
28445454 |
tttatatcgcaatggatgatttgggtgcaacacccctcgtgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccaatctg |
28445355 |
T |
|
| Q |
119 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
218 |
Q |
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|||| || || |||||||| ||||| |||||||| ||||||||||| || ||||| | ||||| || || || | || ||||||| ||| ||||||| |
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| T |
28445354 |
gttttaatggggtgaaaagaaagctagctaaagtgccattactcattaactcatatgccaaaatgcgatgctgtccttcgttgcaatatccaagaagacg |
28445255 |
T |
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| Q |
219 |
aacaagattcctatgatgagttt |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
28445254 |
aacaagattcctatgatgagttt |
28445232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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