View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11521_low_12 (Length: 250)
Name: NF11521_low_12
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 543533 - 543631
Alignment:
| Q |
139 |
gaagattatagaaggaagagaaggagaagcataccgttgtatctgcggcgacagagctgaaatgagggtttcaaagtttaattgacttgagtcgggttc |
237 |
Q |
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| T |
543533 |
gaagattatagaaggaagagaaggagaagcataccgttgtatctgcggcgacagagctgaaatgagggtttcgaagtttaattgacttgagtcgggttc |
543631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 555325 - 555405
Alignment:
| Q |
1 |
aaacctacgttttactgctgcgagtaacgataatgcatcaccaacggagagcttcttcatcttgaagggaattcttattaa |
81 |
Q |
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| T |
555325 |
aaacctacgttttactgctgcgagtaacgataatgcatcaccaactgagagcttcttcatcttgaagggaattcttattaa |
555405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 575354 - 575434
Alignment:
| Q |
1 |
aaacctacgttttactgctgcgagtaacgataatgcatcaccaacggagagcttcttcatcttgaagggaattcttattaa |
81 |
Q |
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| T |
575354 |
aaacctacgttttactgctgcgagtaacgataatgcatcaccaactgagagcttcttcatcttgaagggaattcttattaa |
575434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 575505 - 575593
Alignment:
| Q |
149 |
gaaggaagagaaggagaagcataccgttgtatctgcggcgacagagctgaaatgagggtttcaaagtttaattgacttgagtcgggttc |
237 |
Q |
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| T |
575505 |
gaaggaagagaaggagaagcataccgttgtatctgcggcgacaaagctgaaatgagggtttcgaagtttaatcgacttgagtcgggttc |
575593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 543394 - 543474
Alignment:
| Q |
1 |
aaacctacgttttactgctgcgagtaacgataatgcatcaccaacggagagcttcttcatcttgaagggaattcttattaa |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
543394 |
aaacctacgttttactgctgcgagtaacgataatgcatcaccaacagagagcttcttcatcttgaagggaattattattaa |
543474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 555464 - 555567
Alignment:
| Q |
139 |
gaagattatag--aaggaagagaaggagaagcataccgttgtatctgcggcgacagagctgaaatgagggtttcaaagtttaattgacttgagtcgggtt |
236 |
Q |
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||||||||||| |||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
555464 |
gaagattatagtgaaggcagagaaggagaaacatactgttgtatttgcggcgacagagctgaaatgagggttttgaagtttaattgacttgagtcgggtt |
555563 |
T |
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| Q |
237 |
cttc |
240 |
Q |
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|||| |
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| T |
555564 |
cttc |
555567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 488661 - 488749
Alignment:
| Q |
149 |
gaaggaagagaaggagaagcataccgttgtatctgcggcgacagagctgaaatgagggtttcaaagtttaattgacttgagtcgggttc |
237 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
488661 |
gaaggaagacaaggaggggcataccgttgtatctgcggcgacagagctgaagtgagggtttcgaattttaattgacttgagtcgggttc |
488749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 488512 - 488577
Alignment:
| Q |
1 |
aaacctacgttttactgctgcgagtaacgataatgcatcaccaacggagagcttcttcatcttgaa |
66 |
Q |
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|||| ||||||||| ||||| || |||| |||||||||||||| |||||| |||||||||||||| |
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| T |
488512 |
aaacttacgttttaatgctgagaataaccctaatgcatcaccaagggagagattcttcatcttgaa |
488577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 533020 - 533092
Alignment:
| Q |
9 |
gttttactgctgcgagtaacgataatgcatcaccaacggagagcttcttcatcttgaagggaattcttattaa |
81 |
Q |
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||||||||||||||| ||||| ||||||||||||| || | |||||||||| || |||||||| ||||||| |
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| T |
533020 |
gttttactgctgcgaataacgctaatgcatcaccacgggtgcgcttcttcatgatgcagggaattattattaa |
533092 |
T |
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