View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11521_low_14 (Length: 241)
Name: NF11521_low_14
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 543309 - 543084
Alignment:
| Q |
1 |
aaattaagagtgtacgagttgttggacggccatgaagatttaattttgatattcaacatcttcttgccaactgaatatgaaatcaaacttccattagacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
543309 |
aaattaagagtgtacgagttgttggacggccatgaagatttaatttcgaaattcaacatcttcttgccagctgaatatgaaatcaaacttccattagacc |
543210 |
T |
|
| Q |
101 |
gtgtcgacgacgatgatgatcaacaagaaggccatatgttagagacaaaagatgcatcagcatttctcgagaaagtaaaagatatgtttgatggtaagaa |
200 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
543209 |
gtgacgacgaccatgttgatcaacaagaaggtcgtatgttagagacaaaagatgcatcagcatttctcgagaaagtaaaagatatgtttgatggtaagaa |
543110 |
T |
|
| Q |
201 |
tgaggaaaagtatcatgagtttttag |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
543109 |
tgaggaaaagtatcatgagtttttag |
543084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 575269 - 575048
Alignment:
| Q |
1 |
aaattaagagtgtacgagttgttggacggccatgaagatttaattttgatattcaacatcttcttgccaactgaatatgaaatcaaacttccattagacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
575269 |
aaattaagagtgtacgagttgttggacggccatgaagatttaatttcgaaattcaacatcttcttgccaactgaatatgaaatcaaacttccattggatc |
575170 |
T |
|
| Q |
101 |
gtgtcgacgacgatgatgatcaacaagaaggccatatgttagagacaaaagatgcatcagcatttctcgagaaagtaaaagatatgtttgatggtaagaa |
200 |
Q |
| |
|
|| ||||||||||||||| ||| | |||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
575169 |
gt---gacgacgatgatgatgaactacaaggtcatatgttagcgacaaaagatgcatttgcatttctcgagaaagtaaaagatgtgtttcatggtaagaa |
575073 |
T |
|
| Q |
201 |
tgaggaaaagtatcatgagttttta |
225 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
575072 |
tgaggaaaagtataatgagttttta |
575048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 555240 - 555015
Alignment:
| Q |
1 |
aaattaagagtgtacgagttgttggacggccatgaagatttaattttgatattcaacatcttcttgccaactgaatatgaaatcaaacttccattagacc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
555240 |
aaattaagagtgtacgaattgttggacggccatgaagatttaatttcgagattcaacatcttcttgccaactgaatatgaaatcaaacttccattagatc |
555141 |
T |
|
| Q |
101 |
gtgtcgacgacgatgatgatcaacaagaaggccatatgttagagacaaaagatgcatcagcatttctcgagaaagtaaaagatatgtttgatggtaagaa |
200 |
Q |
| |
|
| | ||| || |||||||| ||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
555140 |
gagacgatgatgatgatgaacaacaagaaggtcgtatgttagagacaaaagatgcatttgcttttctcgagaaagtaaaagatgtgtttcatgataagaa |
555041 |
T |
|
| Q |
201 |
tgaggaaaagtatcatgagtttttag |
226 |
Q |
| |
|
| |||||||||| |||||||||||| |
|
|
| T |
555040 |
tagggaaaagtatgatgagtttttag |
555015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 488427 - 488333
Alignment:
| Q |
1 |
aaattaagagtgtacgagttgttggacggccatgaagatttaattttgatattcaacatcttcttgccaactgaatatgaaatcaaacttccatt |
95 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
488427 |
aaattaagagtgtacgagttgttggatggccatgaagatttaattttgagattcaacaccttcttgccagctaaatatgaaatcaaacttccatt |
488333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 565522 - 565428
Alignment:
| Q |
1 |
aaattaagagtgtacgagttgttggacggccatgaagatttaattttgatattcaacatcttcttgccaactgaatatgaaatcaaacttccatt |
95 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
565522 |
aaattaagagtgtatgagttgtttaaaggccatgaagatttgattttgagattcaacaccttcgtgccaactgaatatgaaatcaaacttccatt |
565428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 532939 - 532846
Alignment:
| Q |
1 |
aaattaagagtgtacgagttgttggacggccatgaagatttaattttgatattcaacatcttcttgccaactgaatatgaaatcaaacttccat |
94 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
532939 |
aaattaagagtgtatgagttgtttaaaggccatgaagatttaattttgagattcaacaccttcgtgacaactgaatatgaaatcaaacttccat |
532846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 47316238 - 47316298
Alignment:
| Q |
35 |
aagatttaattttgatattcaacatcttcttgccaactgaatatgaaatcaaacttccatt |
95 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| | | | |||||||| ||||||||| |
|
|
| T |
47316238 |
aagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccatt |
47316298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University