View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11521_low_4 (Length: 550)
Name: NF11521_low_4
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_low_4 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 277 - 533
Target Start/End: Complemental strand, 38172749 - 38172493
Alignment:
| Q |
277 |
ttttagcttctttaggttggatggtggacgcttatctgctattttgttgcattaatatttaatttaatagtattattccaagggggaatagatgtgaatt |
376 |
Q |
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| T |
38172749 |
ttttagcttctttaggttggatggtggacgcttatctgctattttgttgcattaatatttaatttaatagtattattccaagggggaatagatgtgaatt |
38172650 |
T |
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| Q |
377 |
agcattgtaactagcttaatcaagtaacttgttttacagattgttggtgttcgagtcattgttgaaggggtggagaagcatgaccctcttaatgagggtt |
476 |
Q |
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| T |
38172649 |
agcattgtaactagcttaatcaagtaacttgttttacagattgttggtgttcgagtcattgttgaaggggtggagaagcatgaccctcttaatgagggtt |
38172550 |
T |
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| Q |
477 |
ccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttg |
533 |
Q |
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| T |
38172549 |
ccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttg |
38172493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 38172860 - 38172750
Alignment:
| Q |
110 |
aacattgcagaatctctctagggtccctcctgtgaatgtaaacttgggaccacatcataaaatgctgcctgtgggggttgttacatcggtaagattaccg |
209 |
Q |
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| T |
38172860 |
aacattgcagaatctctctagggtccctcctgtgaatgtaaacttgggaccacatcataaaatgctgcctgtgggggttgttacatcggtaagattactg |
38172761 |
T |
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| Q |
210 |
aaacctcgtct |
220 |
Q |
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| T |
38172760 |
aaacctcgtct |
38172750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 461 - 533
Target Start/End: Complemental strand, 48245012 - 48244940
Alignment:
| Q |
461 |
cctcttaatgagggttccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttg |
533 |
Q |
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| T |
48245012 |
cctcttattgagggttccattctctggattactgaaaggcaaacatcgcttggtttaattgatgagatctttg |
48244940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 31206 - 31138
Alignment:
| Q |
430 |
agtcattgttgaaggggtggagaagcatgaccctcttaatgagggttccattctttggattactgaaag |
498 |
Q |
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| T |
31206 |
agtcattgtggaaggagtggagaagcatgaacctcttaatgagggttctgttctgtggctgactgaaag |
31138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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