View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11521_low_6 (Length: 418)
Name: NF11521_low_6
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 5 - 402
Target Start/End: Complemental strand, 29661117 - 29660720
Alignment:
| Q |
5 |
atgaattggctaagaaattgaactacaaaacatataacatgaaaagttttggtaagatatagtaatctgcacacaagtcttctatatgctgatggattgt |
104 |
Q |
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| T |
29661117 |
atgaattggctaagaaattgaactacaaaacatataacatgaaaagttttggtaagatatagtaatctgcacacaagtcttctatatgctgatggattgt |
29661018 |
T |
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| Q |
105 |
aataaggaggcaaagatgcatcaagcttggtgagaggagtaagacagggcttgactgcaatcaaacctttgtcagagagaatatcaagggcatattttct |
204 |
Q |
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| T |
29661017 |
aataaggaggcaaagatgcatcaagcttggtgagaggagtaagacagggcttggctgcaatcaaacctttgtcagagagaatatcaagggcatattctct |
29660918 |
T |
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| Q |
205 |
ctgattggggtgaatactttaatggaacgatccacgtccattctaagtatgcattttagggagctgaaatccttaattttgaaggtcgaaacaagtacct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
29660917 |
ctgattggggtgaatactttaatggaacgatccacgtccaatctaagtatgcattttagggagctcaaatacttaattttgaaggtcgaaacaagtacct |
29660818 |
T |
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| Q |
305 |
gcttgacagagttaatctctgataaactagggtcaccgagtataacatcttccacatacaaattattaagattcggaaaaccttgaactcataacact |
402 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29660817 |
gcttgacagagttaatctctgataaactagggtcactgagtataacatcttccacatacaaattattaagattcggaaaaccttgaactcataacact |
29660720 |
T |
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