View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11521_low_8 (Length: 340)
Name: NF11521_low_8
Description: NF11521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11521_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 39329968 - 39330309
Alignment:
| Q |
1 |
tcaaattattaacgcaatgtggggctcttagttatacatccatacacatat--acatgagattttaagctatgcacgtgtacttagtgtttagtgtgacg |
98 |
Q |
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| T |
39329968 |
tcaaattattaacccaatgtggggctcttagttatacatccatacacatatatacatgagattttaagctatgcacgtgtacttagtgtttagtgtgacg |
39330067 |
T |
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| Q |
99 |
ctaatagtggacataattaattgctcatatatgacataggacatcctttagtccatataaaacaaaaaggacaattatgtgtcatcattatcataattgt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39330068 |
ctaatagtggacataattaattgctcatatatgacataggacatcctttagtccatataaaacaaaaaggacaattatgtgtcatcattatcataattgt |
39330167 |
T |
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| Q |
199 |
tgttatggctatagtacaagataaagataaatgattgaactaattacttagacaaattaggaaacaccctcagtgatcctttggttaactttctagcttg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39330168 |
tgttatggctatagtacaagataaagataaatgattgaactaattacttagacaaattaggaaacaccctcagtgatcctttggttaactttctagcttg |
39330267 |
T |
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| Q |
299 |
tttttcagctcatctcatagtaactttttaattgctggttaa |
340 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
39330268 |
tttttcagctaatcacatagtaactttttaattgctggttaa |
39330309 |
T |
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