View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11522_high_6 (Length: 214)
Name: NF11522_high_6
Description: NF11522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11522_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 31078348 - 31078150
Alignment:
| Q |
1 |
cagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078348 |
cagcccaatcaagtccccatattttctccgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaac |
31078249 |
T |
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| Q |
101 |
atcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctc |
199 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078248 |
atcattgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctc |
31078150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 31132374 - 31132176
Alignment:
| Q |
1 |
cagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaac |
100 |
Q |
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|||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| ||| |||||||||||||||| || ||||||||||||||||| |
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| T |
31132374 |
cagcccaatcggatccccatattttctcagaccttcccataacatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaac |
31132275 |
T |
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| Q |
101 |
atcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctc |
199 |
Q |
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||||||||| |||||||| |||| |||||||| ||||||||| | | ||||||||||||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
31132274 |
atcatcgtaggctgcttccttagcatccactgaaactggagggtccattctcatactctcgcataacgatgcatgagtgtaaaccatattcttcacctc |
31132176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 31127666 - 31127468
Alignment:
| Q |
1 |
cagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaac |
100 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||| |
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| T |
31127666 |
cagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaac |
31127567 |
T |
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| Q |
101 |
atcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctc |
199 |
Q |
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|| || | || ||||| ||| |||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |
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| T |
31127566 |
gtcgtcacaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctcacataaagccgcatgagtgtaaaccatatccttcacctc |
31127468 |
T |
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