View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11522_low_1 (Length: 397)
Name: NF11522_low_1
Description: NF11522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11522_low_1 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 796 - 1176
Alignment:
| Q |
1 |
cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
796 |
cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct |
895 |
T |
|
| Q |
101 |
ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
896 |
ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtc |
995 |
T |
|
| Q |
201 |
gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
996 |
gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcct |
1095 |
T |
|
| Q |
301 |
ctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1096 |
ctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttg |
1176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 8449 - 8830
Alignment:
| Q |
1 |
cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449 |
cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct |
8548 |
T |
|
| Q |
101 |
ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8549 |
ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtc |
8648 |
T |
|
| Q |
201 |
gtaccatccaattgcttcttttcg-attttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcc |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8649 |
gtaccatccaattgcttcttttcgtattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcc |
8748 |
T |
|
| Q |
300 |
tctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8749 |
tctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttg |
8830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 6506771 - 6507151
Alignment:
| Q |
1 |
cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506771 |
cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct |
6506870 |
T |
|
| Q |
101 |
ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506871 |
ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtc |
6506970 |
T |
|
| Q |
201 |
gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506971 |
gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcct |
6507070 |
T |
|
| Q |
301 |
ctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507071 |
ctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttg |
6507151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 133 - 381
Target Start/End: Complemental strand, 6521832 - 6521584
Alignment:
| Q |
133 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac |
232 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
6521832 |
gcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac |
6521733 |
T |
|
| Q |
233 |
aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggt |
332 |
Q |
| |
|
|| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
6521732 |
aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagt |
6521633 |
T |
|
| Q |
333 |
gtttatgccataagaggaattatagaaaccgtagttaatatctttgttg |
381 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6521632 |
gttgtttccataagaggaattatagaaaccgtagttgatatctttgttg |
6521584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 4 - 381
Target Start/End: Original strand, 6512681 - 6513052
Alignment:
| Q |
4 |
acagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttg |
103 |
Q |
| |
|
|||||||||||||||||||| || || |||| |||| ||||| ||||||||| ||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
6512681 |
acagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttca------tttg |
6512774 |
T |
|
| Q |
104 |
ttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgta |
203 |
Q |
| |
|
| || || | |||| ||||| | | ||||| ||||||| | ||| ||||||||||||| |||| |||||||||||||| | || || || || |
|
|
| T |
6512775 |
tagcattgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcata |
6512874 |
T |
|
| Q |
204 |
ccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctcta |
303 |
Q |
| |
|
||| ||||| || ||||||||||||||||||||||||||||||| | ||| |||||| | | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6512875 |
ccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctcta |
6512974 |
T |
|
| Q |
304 |
cacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttg |
381 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6512975 |
caaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttg |
6513052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 6517077 - 6517451
Alignment:
| Q |
1 |
cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||||| | |
|
|
| T |
6517077 |
cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------t |
6517170 |
T |
|
| Q |
101 |
ttgttgcgttctgcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgt |
199 |
Q |
| |
|
|| | || ||| |||| ||||||| |||| | |||| | |||| || |||||||||||||||| |||| |||||||||||||| | ||||| | |
|
|
| T |
6517171 |
ttatcgccgtcttcaaactccatgct-tcataataaggtctagtgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat |
6517269 |
T |
|
| Q |
200 |
cgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcc |
299 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||| ||||| | |||||| |
|
|
| T |
6517270 |
cgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcc |
6517369 |
T |
|
| Q |
300 |
tctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttg |
381 |
Q |
| |
|
||| || |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
6517370 |
tctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttg |
6517451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 47778150 - 47778041
Alignment:
| Q |
133 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac |
232 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||| |
|
|
| T |
47778150 |
gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggac |
47778051 |
T |
|
| Q |
233 |
aaagttgtgt |
242 |
Q |
| |
|
|||||||||| |
|
|
| T |
47778050 |
aaagttgtgt |
47778041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 47713336 - 47713423
Alignment:
| Q |
281 |
catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagtt |
368 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
47713336 |
catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagtt |
47713423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 47760133 - 47760338
Alignment:
| Q |
157 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttg |
256 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||| || |||| |||| ||||||||||||||| | ||| ||||||||| ||| ||||| | ||| |
|
|
| T |
47760133 |
aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg |
47760226 |
T |
|
| Q |
257 |
aattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattata |
356 |
Q |
| |
|
||| | ||| ||| | | ||| | |||||||| |||||||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||| || |
|
|
| T |
47760227 |
aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgta |
47760326 |
T |
|
| Q |
357 |
gaaaccgtagtt |
368 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47760327 |
gaaaccgtagtt |
47760338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 47745921 - 47746006
Alignment:
| Q |
283 |
tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagtt |
368 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||||||| || |||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
47745921 |
tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagtt |
47746006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 6523810 - 6523725
Alignment:
| Q |
157 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgt |
242 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| | ||| ||||||| ||||| |
|
|
| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgt |
6523725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 381
Target Start/End: Original strand, 47718135 - 47718230
Alignment:
| Q |
286 |
ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttg |
381 |
Q |
| |
|
||||| ||||||||||| || || |||| |||||||||||||| |||||| |||||||||| |||| |||||||||||||| || ||| ||||| |
|
|
| T |
47718135 |
ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttg |
47718230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 47782034 - 47781969
Alignment:
| Q |
157 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
222 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47782034 |
aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt |
47781969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 47788272 - 47788183
Alignment:
| Q |
133 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
222 |
Q |
| |
|
|||||||| ||||| || | ||| | ||||||||||| ||| |||| ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47788272 |
gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
47788183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6521958 - 6521896
Alignment:
| Q |
1 |
cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaa |
63 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||| ||| ||| |
|
|
| T |
6521958 |
cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaa |
6521896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 326
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
| Q |
181 |
aacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaat |
280 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| |||| || |||||||||||||| || |||||| || | ||||| ||||||||| |
|
|
| T |
722305 |
aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat |
722207 |
T |
|
| Q |
281 |
catcgggtttgacatctcctctacacagtccaatagcgtttacttt |
326 |
Q |
| |
|
||| | | || |||||||||||||| ||||||| |||||||||| |
|
|
| T |
722206 |
cattgagcttaacatctcctctacatagtccaaccacgtttacttt |
722161 |
T |
|
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 704425 - 704378
Alignment:
| Q |
306 |
cagtccaatagcgtttactttgtcggtgtttatgccataagaggaatt |
353 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
704425 |
cagtccaatagcgtttactttgtcagtgtttatgtcataagatgaatt |
704378 |
T |
|
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